Hb_003685_020

Information

Type -
Description -
Location Contig3685: 37582-40991
Sequence    

Annotation

kegg
ID fve:101300410
description putative laccase-9-like
nr
ID XP_004290454.1
description PREDICTED: laccase-14-like [Fragaria vesca subsp. vesca]
swissprot
ID Q7XE50
description Putative laccase-16 OS=Oryza sativa subsp. japonica GN=LAC16 PE=5 SV=1
trembl
ID C5XYR8
description Laccase OS=Sorghum bicolor GN=Sb04g027850 PE=3 SV=1
Gene Ontology
ID GO:0048046
description lacasse diphenol oxidase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003685_020 0.0 - - PREDICTED: laccase-14-like [Fragaria vesca subsp. vesca]
2 Hb_034168_020 0.0029699842 - - putative uncharacterized protein (mitochondrion) [Hevea brasiliensis]
3 Hb_118410_020 0.0079788641 - - PREDICTED: UDP-glycosyltransferase 76C4 [Vitis vinifera]
4 Hb_001281_030 0.0085411556 - - hypothetical protein POPTR_0010s18450g [Populus trichocarpa]
5 Hb_000337_020 0.0104187517 transcription factor TF Family: MYB PREDICTED: myb-related protein 308 isoform X2 [Jatropha curcas]
6 Hb_000313_160 0.0168080879 - - BnaC02g20570D [Brassica napus]
7 Hb_001946_230 0.0190225329 - - -
8 Hb_061183_010 0.0265447456 - - PREDICTED: uncharacterized protein LOC105775353 [Gossypium raimondii]
9 Hb_000039_140 0.0326128734 - - nuclease, putative [Ricinus communis]
10 Hb_007317_040 0.0373993741 transcription factor TF Family: bZIP PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 7 [Jatropha curcas]
11 Hb_000185_110 0.0443515106 - - hypothetical protein JCGZ_11437 [Jatropha curcas]
12 Hb_029552_010 0.0470844366 - - hypothetical protein JCGZ_08684 [Jatropha curcas]
13 Hb_019449_010 0.0582647614 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
14 Hb_001736_010 0.0583665677 - - ring finger protein, putative [Ricinus communis]
15 Hb_000192_100 0.0586997175 - - hypothetical protein CICLE_v10033628mg, partial [Citrus clementina]
16 Hb_003020_320 0.0600009496 - - -
17 Hb_054127_030 0.0647607955 - - PREDICTED: putative L-type lectin-domain containing receptor kinase II.2 [Jatropha curcas]
18 Hb_081843_010 0.0658691464 - - PREDICTED: uncharacterized protein LOC104880938 [Vitis vinifera]
19 Hb_009026_010 0.0693396535 - - Squalene monooxygenase, putative [Ricinus communis]
20 Hb_052135_050 0.0700132794 - - PREDICTED: probable pectinesterase 67 [Jatropha curcas]

Gene co-expression network

sample Hb_003685_020 Hb_003685_020 Hb_034168_020 Hb_034168_020 Hb_003685_020--Hb_034168_020 Hb_118410_020 Hb_118410_020 Hb_003685_020--Hb_118410_020 Hb_001281_030 Hb_001281_030 Hb_003685_020--Hb_001281_030 Hb_000337_020 Hb_000337_020 Hb_003685_020--Hb_000337_020 Hb_000313_160 Hb_000313_160 Hb_003685_020--Hb_000313_160 Hb_001946_230 Hb_001946_230 Hb_003685_020--Hb_001946_230 Hb_034168_020--Hb_118410_020 Hb_034168_020--Hb_001281_030 Hb_034168_020--Hb_000337_020 Hb_034168_020--Hb_000313_160 Hb_034168_020--Hb_001946_230 Hb_118410_020--Hb_001281_030 Hb_118410_020--Hb_000337_020 Hb_000039_140 Hb_000039_140 Hb_118410_020--Hb_000039_140 Hb_118410_020--Hb_000313_160 Hb_001281_030--Hb_000337_020 Hb_001281_030--Hb_000313_160 Hb_001281_030--Hb_001946_230 Hb_000337_020--Hb_000313_160 Hb_000337_020--Hb_001946_230 Hb_061183_010 Hb_061183_010 Hb_000337_020--Hb_061183_010 Hb_000313_160--Hb_001946_230 Hb_000313_160--Hb_061183_010 Hb_001946_230--Hb_061183_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0252954 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.0427679

CAGE analysis