Hb_001946_230

Information

Type -
Description -
Location Contig1946: 217272-218215
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001946_230 0.0 - - -
2 Hb_000313_160 0.0022147177 - - BnaC02g20570D [Brassica napus]
3 Hb_061183_010 0.0075236659 - - PREDICTED: uncharacterized protein LOC105775353 [Gossypium raimondii]
4 Hb_000337_020 0.0086044409 transcription factor TF Family: MYB PREDICTED: myb-related protein 308 isoform X2 [Jatropha curcas]
5 Hb_001281_030 0.010482037 - - hypothetical protein POPTR_0010s18450g [Populus trichocarpa]
6 Hb_003685_020 0.0190225329 - - PREDICTED: laccase-14-like [Fragaria vesca subsp. vesca]
7 Hb_034168_020 0.0219920318 - - putative uncharacterized protein (mitochondrion) [Hevea brasiliensis]
8 Hb_118410_020 0.0269997901 - - PREDICTED: UDP-glycosyltransferase 76C4 [Vitis vinifera]
9 Hb_003020_320 0.0409959336 - - -
10 Hb_000039_140 0.0516226031 - - nuclease, putative [Ricinus communis]
11 Hb_099335_030 0.0530925886 - - hypothetical protein M569_10107, partial [Genlisea aurea]
12 Hb_000140_020 0.0549415732 - - BnaA02g09930D [Brassica napus]
13 Hb_002056_040 0.0554093409 - - arsenical pump-driving atpase, putative [Ricinus communis]
14 Hb_007317_040 0.0564058014 transcription factor TF Family: bZIP PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 7 [Jatropha curcas]
15 Hb_001736_010 0.0607773099 - - ring finger protein, putative [Ricinus communis]
16 Hb_000185_110 0.0633524678 - - hypothetical protein JCGZ_11437 [Jatropha curcas]
17 Hb_003598_060 0.0652903349 - - hypothetical protein POPTR_0006s25370g [Populus trichocarpa]
18 Hb_029552_010 0.0660830222 - - hypothetical protein JCGZ_08684 [Jatropha curcas]
19 Hb_019449_010 0.0772523195 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
20 Hb_000192_100 0.077686803 - - hypothetical protein CICLE_v10033628mg, partial [Citrus clementina]

Gene co-expression network

sample Hb_001946_230 Hb_001946_230 Hb_000313_160 Hb_000313_160 Hb_001946_230--Hb_000313_160 Hb_061183_010 Hb_061183_010 Hb_001946_230--Hb_061183_010 Hb_000337_020 Hb_000337_020 Hb_001946_230--Hb_000337_020 Hb_001281_030 Hb_001281_030 Hb_001946_230--Hb_001281_030 Hb_003685_020 Hb_003685_020 Hb_001946_230--Hb_003685_020 Hb_034168_020 Hb_034168_020 Hb_001946_230--Hb_034168_020 Hb_000313_160--Hb_000337_020 Hb_000313_160--Hb_001281_030 Hb_000313_160--Hb_061183_010 Hb_000313_160--Hb_003685_020 Hb_000313_160--Hb_034168_020 Hb_061183_010--Hb_000337_020 Hb_061183_010--Hb_001281_030 Hb_061183_010--Hb_003685_020 Hb_061183_010--Hb_034168_020 Hb_000337_020--Hb_001281_030 Hb_000337_020--Hb_003685_020 Hb_000337_020--Hb_034168_020 Hb_001281_030--Hb_003685_020 Hb_001281_030--Hb_034168_020 Hb_118410_020 Hb_118410_020 Hb_001281_030--Hb_118410_020 Hb_003685_020--Hb_034168_020 Hb_003685_020--Hb_118410_020 Hb_034168_020--Hb_118410_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.156924 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.241953

CAGE analysis