Hb_034168_020

Information

Type -
Description -
Location Contig34168: 17658-18247
Sequence    

Annotation

kegg
ID -
description -
nr
ID BAO50902.1
description putative uncharacterized protein (mitochondrion) [Hevea brasiliensis]
swissprot
ID P92551
description Uncharacterized mitochondrial protein AtMg01210 OS=Arabidopsis thaliana GN=AtMg01210 PE=4 SV=1
trembl
ID W6JNH9
description Uncharacterized protein OS=Hevea brasiliensis GN=orf129 PE=4 SV=1
Gene Ontology
ID GO:0005747
description m1210_arath ame: full=uncharacterized mitochondrial protein g01210 ame: full=orf101b

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35682: 15880-17131
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_034168_020 0.0 - - putative uncharacterized protein (mitochondrion) [Hevea brasiliensis]
2 Hb_003685_020 0.0029699842 - - PREDICTED: laccase-14-like [Fragaria vesca subsp. vesca]
3 Hb_118410_020 0.0050089272 - - PREDICTED: UDP-glycosyltransferase 76C4 [Vitis vinifera]
4 Hb_001281_030 0.0115110248 - - hypothetical protein POPTR_0010s18450g [Populus trichocarpa]
5 Hb_000337_020 0.013388573 transcription factor TF Family: MYB PREDICTED: myb-related protein 308 isoform X2 [Jatropha curcas]
6 Hb_000313_160 0.0197776858 - - BnaC02g20570D [Brassica napus]
7 Hb_001946_230 0.0219920318 - - -
8 Hb_061183_010 0.0295138259 - - PREDICTED: uncharacterized protein LOC105775353 [Gossypium raimondii]
9 Hb_000039_140 0.0296440584 - - nuclease, putative [Ricinus communis]
10 Hb_007317_040 0.0344309536 transcription factor TF Family: bZIP PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 7 [Jatropha curcas]
11 Hb_000185_110 0.0413837689 - - hypothetical protein JCGZ_11437 [Jatropha curcas]
12 Hb_029552_010 0.0441169965 - - hypothetical protein JCGZ_08684 [Jatropha curcas]
13 Hb_019449_010 0.0552987634 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
14 Hb_000192_100 0.0557337824 - - hypothetical protein CICLE_v10033628mg, partial [Citrus clementina]
15 Hb_001736_010 0.0585397945 - - ring finger protein, putative [Ricinus communis]
16 Hb_054127_030 0.0617957921 - - PREDICTED: putative L-type lectin-domain containing receptor kinase II.2 [Jatropha curcas]
17 Hb_081843_010 0.0629043244 - - PREDICTED: uncharacterized protein LOC104880938 [Vitis vinifera]
18 Hb_003020_320 0.0629666746 - - -
19 Hb_009026_010 0.066375422 - - Squalene monooxygenase, putative [Ricinus communis]
20 Hb_052135_050 0.0670491664 - - PREDICTED: probable pectinesterase 67 [Jatropha curcas]

Gene co-expression network

sample Hb_034168_020 Hb_034168_020 Hb_003685_020 Hb_003685_020 Hb_034168_020--Hb_003685_020 Hb_118410_020 Hb_118410_020 Hb_034168_020--Hb_118410_020 Hb_001281_030 Hb_001281_030 Hb_034168_020--Hb_001281_030 Hb_000337_020 Hb_000337_020 Hb_034168_020--Hb_000337_020 Hb_000313_160 Hb_000313_160 Hb_034168_020--Hb_000313_160 Hb_001946_230 Hb_001946_230 Hb_034168_020--Hb_001946_230 Hb_003685_020--Hb_118410_020 Hb_003685_020--Hb_001281_030 Hb_003685_020--Hb_000337_020 Hb_003685_020--Hb_000313_160 Hb_003685_020--Hb_001946_230 Hb_118410_020--Hb_001281_030 Hb_118410_020--Hb_000337_020 Hb_000039_140 Hb_000039_140 Hb_118410_020--Hb_000039_140 Hb_118410_020--Hb_000313_160 Hb_001281_030--Hb_000337_020 Hb_001281_030--Hb_000313_160 Hb_001281_030--Hb_001946_230 Hb_000337_020--Hb_000313_160 Hb_000337_020--Hb_001946_230 Hb_061183_010 Hb_061183_010 Hb_000337_020--Hb_061183_010 Hb_000313_160--Hb_001946_230 Hb_000313_160--Hb_061183_010 Hb_001946_230--Hb_061183_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.231128 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.396479

CAGE analysis