Hb_000313_160

Information

Type -
Description -
Location Contig313: 253250-254701
Sequence    

Annotation

kegg
ID dosa:Os02t0668900-00
description Os02g0668900; Similar to H0211B05.3 protein.
nr
ID CDY09515.1
description BnaC02g20570D [Brassica napus]
swissprot
ID Q9SIF3
description GDSL esterase/lipase At2g04020 OS=Arabidopsis thaliana GN=At2g04020 PE=3 SV=2
trembl
ID A0A078F509
description BnaC02g20570D protein OS=Brassica napus GN=BnaC02g20570D PE=4 SV=1
Gene Ontology
ID GO:0016298
description gdsl esterase lipase 6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000313_160 0.0 - - BnaC02g20570D [Brassica napus]
2 Hb_001946_230 0.0022147177 - - -
3 Hb_000337_020 0.0063897698 transcription factor TF Family: MYB PREDICTED: myb-related protein 308 isoform X2 [Jatropha curcas]
4 Hb_001281_030 0.0082673928 - - hypothetical protein POPTR_0010s18450g [Populus trichocarpa]
5 Hb_061183_010 0.0097383221 - - PREDICTED: uncharacterized protein LOC105775353 [Gossypium raimondii]
6 Hb_003685_020 0.0168080879 - - PREDICTED: laccase-14-like [Fragaria vesca subsp. vesca]
7 Hb_034168_020 0.0197776858 - - putative uncharacterized protein (mitochondrion) [Hevea brasiliensis]
8 Hb_118410_020 0.0247856464 - - PREDICTED: UDP-glycosyltransferase 76C4 [Vitis vinifera]
9 Hb_003020_320 0.0432091969 - - -
10 Hb_000039_140 0.0494101139 - - nuclease, putative [Ricinus communis]
11 Hb_007317_040 0.0541937644 transcription factor TF Family: bZIP PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 7 [Jatropha curcas]
12 Hb_099335_030 0.0553049116 - - hypothetical protein M569_10107, partial [Genlisea aurea]
13 Hb_000140_020 0.0571537326 - - BnaA02g09930D [Brassica napus]
14 Hb_002056_040 0.057621458 - - arsenical pump-driving atpase, putative [Ricinus communis]
15 Hb_001736_010 0.06019427 - - ring finger protein, putative [Ricinus communis]
16 Hb_000185_110 0.0611411657 - - hypothetical protein JCGZ_11437 [Jatropha curcas]
17 Hb_029552_010 0.0638720346 - - hypothetical protein JCGZ_08684 [Jatropha curcas]
18 Hb_003598_060 0.0675014812 - - hypothetical protein POPTR_0006s25370g [Populus trichocarpa]
19 Hb_019449_010 0.0750427721 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
20 Hb_000192_100 0.0754773166 - - hypothetical protein CICLE_v10033628mg, partial [Citrus clementina]

Gene co-expression network

sample Hb_000313_160 Hb_000313_160 Hb_001946_230 Hb_001946_230 Hb_000313_160--Hb_001946_230 Hb_000337_020 Hb_000337_020 Hb_000313_160--Hb_000337_020 Hb_001281_030 Hb_001281_030 Hb_000313_160--Hb_001281_030 Hb_061183_010 Hb_061183_010 Hb_000313_160--Hb_061183_010 Hb_003685_020 Hb_003685_020 Hb_000313_160--Hb_003685_020 Hb_034168_020 Hb_034168_020 Hb_000313_160--Hb_034168_020 Hb_001946_230--Hb_061183_010 Hb_001946_230--Hb_000337_020 Hb_001946_230--Hb_001281_030 Hb_001946_230--Hb_003685_020 Hb_001946_230--Hb_034168_020 Hb_000337_020--Hb_001281_030 Hb_000337_020--Hb_003685_020 Hb_000337_020--Hb_034168_020 Hb_000337_020--Hb_061183_010 Hb_001281_030--Hb_003685_020 Hb_001281_030--Hb_034168_020 Hb_118410_020 Hb_118410_020 Hb_001281_030--Hb_118410_020 Hb_061183_010--Hb_001281_030 Hb_061183_010--Hb_003685_020 Hb_061183_010--Hb_034168_020 Hb_003685_020--Hb_034168_020 Hb_003685_020--Hb_118410_020 Hb_034168_020--Hb_118410_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.12502 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.194832

CAGE analysis