Hb_001281_030

Information

Type -
Description -
Location Contig1281: 11928-14107
Sequence    

Annotation

kegg
ID pop:POPTR_0010s18450g
description POPTRDRAFT_770108; hypothetical protein
nr
ID XP_002315099.2
description hypothetical protein POPTR_0010s18450g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9HYE6
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s18450g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001281_030 0.0 - - hypothetical protein POPTR_0010s18450g [Populus trichocarpa]
2 Hb_000337_020 0.0018776612 transcription factor TF Family: MYB PREDICTED: myb-related protein 308 isoform X2 [Jatropha curcas]
3 Hb_000313_160 0.0082673928 - - BnaC02g20570D [Brassica napus]
4 Hb_003685_020 0.0085411556 - - PREDICTED: laccase-14-like [Fragaria vesca subsp. vesca]
5 Hb_001946_230 0.010482037 - - -
6 Hb_034168_020 0.0115110248 - - putative uncharacterized protein (mitochondrion) [Hevea brasiliensis]
7 Hb_118410_020 0.0165195747 - - PREDICTED: UDP-glycosyltransferase 76C4 [Vitis vinifera]
8 Hb_061183_010 0.0180051629 - - PREDICTED: uncharacterized protein LOC105775353 [Gossypium raimondii]
9 Hb_000039_140 0.0411494069 - - nuclease, putative [Ricinus communis]
10 Hb_007317_040 0.045934589 transcription factor TF Family: bZIP PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 7 [Jatropha curcas]
11 Hb_003020_320 0.0514697326 - - -
12 Hb_000185_110 0.0528845071 - - hypothetical protein JCGZ_11437 [Jatropha curcas]
13 Hb_029552_010 0.0556164615 - - hypothetical protein JCGZ_08684 [Jatropha curcas]
14 Hb_001736_010 0.0587060543 - - ring finger protein, putative [Ricinus communis]
15 Hb_099335_030 0.0635615411 - - hypothetical protein M569_10107, partial [Genlisea aurea]
16 Hb_000140_020 0.0654096906 - - BnaA02g09930D [Brassica napus]
17 Hb_002056_040 0.0658772431 - - arsenical pump-driving atpase, putative [Ricinus communis]
18 Hb_019449_010 0.066792214 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
19 Hb_000192_100 0.0672269725 - - hypothetical protein CICLE_v10033628mg, partial [Citrus clementina]
20 Hb_054127_030 0.0732851422 - - PREDICTED: putative L-type lectin-domain containing receptor kinase II.2 [Jatropha curcas]

Gene co-expression network

sample Hb_001281_030 Hb_001281_030 Hb_000337_020 Hb_000337_020 Hb_001281_030--Hb_000337_020 Hb_000313_160 Hb_000313_160 Hb_001281_030--Hb_000313_160 Hb_003685_020 Hb_003685_020 Hb_001281_030--Hb_003685_020 Hb_001946_230 Hb_001946_230 Hb_001281_030--Hb_001946_230 Hb_034168_020 Hb_034168_020 Hb_001281_030--Hb_034168_020 Hb_118410_020 Hb_118410_020 Hb_001281_030--Hb_118410_020 Hb_000337_020--Hb_000313_160 Hb_000337_020--Hb_001946_230 Hb_000337_020--Hb_003685_020 Hb_000337_020--Hb_034168_020 Hb_061183_010 Hb_061183_010 Hb_000337_020--Hb_061183_010 Hb_000313_160--Hb_001946_230 Hb_000313_160--Hb_061183_010 Hb_000313_160--Hb_003685_020 Hb_000313_160--Hb_034168_020 Hb_003685_020--Hb_034168_020 Hb_003685_020--Hb_118410_020 Hb_003685_020--Hb_001946_230 Hb_001946_230--Hb_061183_010 Hb_001946_230--Hb_034168_020 Hb_034168_020--Hb_118410_020 Hb_118410_020--Hb_000337_020 Hb_000039_140 Hb_000039_140 Hb_118410_020--Hb_000039_140 Hb_118410_020--Hb_000313_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0443877 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.0719963

CAGE analysis