Hb_000313_130

Information

Type -
Description -
Location Contig313: 199767-201530
Sequence    

Annotation

kegg
ID rcu:RCOM_0274620
description zinc finger protein, putative
nr
ID XP_002532217.1
description zinc finger protein, putative [Ricinus communis]
swissprot
ID Q9C996
description GDSL esterase/lipase 6 OS=Arabidopsis thaliana GN=GLIP6 PE=2 SV=1
trembl
ID B9T1U8
description Zinc finger protein, putative OS=Ricinus communis GN=RCOM_0274620 PE=4 SV=1
Gene Ontology
ID GO:0016298
description gdsl esterase lipase 6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000313_130 0.0 - - zinc finger protein, putative [Ricinus communis]
2 Hb_001736_010 0.0414478287 - - ring finger protein, putative [Ricinus communis]
3 Hb_007317_040 0.0660613814 transcription factor TF Family: bZIP PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 7 [Jatropha curcas]
4 Hb_000185_110 0.0662972807 - - hypothetical protein JCGZ_11437 [Jatropha curcas]
5 Hb_000039_140 0.0663220807 - - nuclease, putative [Ricinus communis]
6 Hb_029552_010 0.0665883014 - - hypothetical protein JCGZ_08684 [Jatropha curcas]
7 Hb_019449_010 0.0689018861 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
8 Hb_000192_100 0.0690268806 - - hypothetical protein CICLE_v10033628mg, partial [Citrus clementina]
9 Hb_185830_050 0.0695262839 - - PREDICTED: probable galactinol--sucrose galactosyltransferase 2 [Jatropha curcas]
10 Hb_054127_030 0.0710232274 - - PREDICTED: putative L-type lectin-domain containing receptor kinase II.2 [Jatropha curcas]
11 Hb_081843_010 0.071437865 - - PREDICTED: uncharacterized protein LOC104880938 [Vitis vinifera]
12 Hb_118410_020 0.072785981 - - PREDICTED: UDP-glycosyltransferase 76C4 [Vitis vinifera]
13 Hb_009026_010 0.0728300839 - - Squalene monooxygenase, putative [Ricinus communis]
14 Hb_052135_050 0.0731163381 - - PREDICTED: probable pectinesterase 67 [Jatropha curcas]
15 Hb_001823_010 0.0745555368 - - PREDICTED: ribosome-inactivating protein cucurmosin-like [Jatropha curcas]
16 Hb_000028_290 0.0745720257 - - hypothetical protein JCGZ_25310 [Jatropha curcas]
17 Hb_001024_010 0.0746083431 - - phosphofructokinase [Hevea brasiliensis]
18 Hb_034168_020 0.0750219357 - - putative uncharacterized protein (mitochondrion) [Hevea brasiliensis]
19 Hb_126077_010 0.0751514507 - - -
20 Hb_003685_020 0.0764708856 - - PREDICTED: laccase-14-like [Fragaria vesca subsp. vesca]

Gene co-expression network

sample Hb_000313_130 Hb_000313_130 Hb_001736_010 Hb_001736_010 Hb_000313_130--Hb_001736_010 Hb_007317_040 Hb_007317_040 Hb_000313_130--Hb_007317_040 Hb_000185_110 Hb_000185_110 Hb_000313_130--Hb_000185_110 Hb_000039_140 Hb_000039_140 Hb_000313_130--Hb_000039_140 Hb_029552_010 Hb_029552_010 Hb_000313_130--Hb_029552_010 Hb_019449_010 Hb_019449_010 Hb_000313_130--Hb_019449_010 Hb_001823_010 Hb_001823_010 Hb_001736_010--Hb_001823_010 Hb_003685_020 Hb_003685_020 Hb_001736_010--Hb_003685_020 Hb_034168_020 Hb_034168_020 Hb_001736_010--Hb_034168_020 Hb_001281_030 Hb_001281_030 Hb_001736_010--Hb_001281_030 Hb_000337_020 Hb_000337_020 Hb_001736_010--Hb_000337_020 Hb_007317_040--Hb_000039_140 Hb_007317_040--Hb_000185_110 Hb_007317_040--Hb_029552_010 Hb_007317_040--Hb_019449_010 Hb_000192_100 Hb_000192_100 Hb_007317_040--Hb_000192_100 Hb_054127_030 Hb_054127_030 Hb_007317_040--Hb_054127_030 Hb_000185_110--Hb_029552_010 Hb_000185_110--Hb_000039_140 Hb_000185_110--Hb_019449_010 Hb_000185_110--Hb_000192_100 Hb_000185_110--Hb_054127_030 Hb_000039_140--Hb_029552_010 Hb_118410_020 Hb_118410_020 Hb_000039_140--Hb_118410_020 Hb_000039_140--Hb_019449_010 Hb_000039_140--Hb_000192_100 Hb_029552_010--Hb_019449_010 Hb_029552_010--Hb_000192_100 Hb_029552_010--Hb_054127_030 Hb_019449_010--Hb_000192_100 Hb_019449_010--Hb_054127_030 Hb_081843_010 Hb_081843_010 Hb_019449_010--Hb_081843_010 Hb_009026_010 Hb_009026_010 Hb_019449_010--Hb_009026_010 Hb_052135_050 Hb_052135_050 Hb_019449_010--Hb_052135_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 1.27916 0.0341893 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 2.61744

CAGE analysis