Hb_001823_010

Information

Type -
Description -
Location Contig1823: 12674-16972
Sequence    

Annotation

kegg
ID rcu:RCOM_2160650
description ricin-agglutinin family protein (EC:3.2.2.22)
nr
ID XP_012075860.1
description PREDICTED: ribosome-inactivating protein cucurmosin-like [Jatropha curcas]
swissprot
ID P33186
description Ribosome-inactivating protein gelonin OS=Suregada multiflora GN=GEL PE=1 SV=2
trembl
ID A0A067KEZ0
description rRNA N-glycosidase OS=Jatropha curcas GN=JCGZ_10887 PE=3 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001823_010 0.0 - - PREDICTED: ribosome-inactivating protein cucurmosin-like [Jatropha curcas]
2 Hb_000083_020 0.0404332164 - - hypothetical protein JCGZ_24970 [Jatropha curcas]
3 Hb_001736_010 0.0550910705 - - ring finger protein, putative [Ricinus communis]
4 Hb_000482_170 0.0578644468 transcription factor TF Family: C2C2-GATA GATA nirate-inducible carbon-metabolism involved protein [Populus nigra x Populus x canadensis]
5 Hb_005245_110 0.0598260196 - - hypothetical protein CISIN_1g0225141mg [Citrus sinensis]
6 Hb_000003_490 0.0615874252 - - PREDICTED: uncharacterized protein LOC105631559 isoform X2 [Jatropha curcas]
7 Hb_005605_010 0.0627282146 - - hypothetical protein POPTR_0019s13220g [Populus trichocarpa]
8 Hb_003921_010 0.0681048249 - - conserved hypothetical protein [Ricinus communis]
9 Hb_006901_010 0.0691013501 - - hypothetical protein JCGZ_20722 [Jatropha curcas]
10 Hb_004837_230 0.0738023074 - - unknown [Populus trichocarpa]
11 Hb_000313_130 0.0745555368 - - zinc finger protein, putative [Ricinus communis]
12 Hb_002014_140 0.0847138623 transcription factor TF Family: M-type mads box protein, putative [Ricinus communis]
13 Hb_185830_050 0.0883342053 - - PREDICTED: probable galactinol--sucrose galactosyltransferase 2 [Jatropha curcas]
14 Hb_008566_060 0.092818359 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001433_080 0.0940522531 - - Pectinesterase precursor, putative [Ricinus communis]
16 Hb_000191_090 0.0941218825 transcription factor TF Family: MYB GHMYB10, putative [Theobroma cacao]
17 Hb_000165_170 0.0943668538 transcription factor TF Family: G2-like hypothetical protein POPTR_0010s19310g [Populus trichocarpa]
18 Hb_002893_200 0.096622975 - - aldehyde dehydrogenase, putative [Ricinus communis]
19 Hb_099182_010 0.099968793 - - PREDICTED: uncharacterized protein LOC101214783 [Cucumis sativus]
20 Hb_001279_380 0.1008159183 - - PREDICTED: uncharacterized protein LOC105115824 isoform X1 [Populus euphratica]

Gene co-expression network

sample Hb_001823_010 Hb_001823_010 Hb_000083_020 Hb_000083_020 Hb_001823_010--Hb_000083_020 Hb_001736_010 Hb_001736_010 Hb_001823_010--Hb_001736_010 Hb_000482_170 Hb_000482_170 Hb_001823_010--Hb_000482_170 Hb_005245_110 Hb_005245_110 Hb_001823_010--Hb_005245_110 Hb_000003_490 Hb_000003_490 Hb_001823_010--Hb_000003_490 Hb_005605_010 Hb_005605_010 Hb_001823_010--Hb_005605_010 Hb_000083_020--Hb_005605_010 Hb_006901_010 Hb_006901_010 Hb_000083_020--Hb_006901_010 Hb_000083_020--Hb_000482_170 Hb_000083_020--Hb_005245_110 Hb_002014_140 Hb_002014_140 Hb_000083_020--Hb_002014_140 Hb_000313_130 Hb_000313_130 Hb_001736_010--Hb_000313_130 Hb_003685_020 Hb_003685_020 Hb_001736_010--Hb_003685_020 Hb_034168_020 Hb_034168_020 Hb_001736_010--Hb_034168_020 Hb_001281_030 Hb_001281_030 Hb_001736_010--Hb_001281_030 Hb_000337_020 Hb_000337_020 Hb_001736_010--Hb_000337_020 Hb_000482_170--Hb_006901_010 Hb_000482_170--Hb_005605_010 Hb_000482_170--Hb_002014_140 Hb_000482_170--Hb_005245_110 Hb_003921_010 Hb_003921_010 Hb_005245_110--Hb_003921_010 Hb_005245_110--Hb_005605_010 Hb_004837_230 Hb_004837_230 Hb_005245_110--Hb_004837_230 Hb_000191_090 Hb_000191_090 Hb_000003_490--Hb_000191_090 Hb_000003_490--Hb_003921_010 Hb_000003_490--Hb_005245_110 Hb_099182_010 Hb_099182_010 Hb_000003_490--Hb_099182_010 Hb_000003_490--Hb_000482_170 Hb_005605_010--Hb_004837_230 Hb_005605_010--Hb_006901_010 Hb_005605_010--Hb_003921_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 1.22158 0.0634272 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 1.8422

CAGE analysis