Hb_000083_020

Information

Type -
Description -
Location Contig83: 25564-25911
Sequence    

Annotation

kegg
ID tcc:TCM_007393
description Hydroxyproline-rich glycoprotein family protein, putative
nr
ID KDP40971.1
description hypothetical protein JCGZ_24970 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KXM6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24970 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59764: 25277-25962
cDNA
(Sanger)
(ID:Location)		 001_A05.ab1: 25352-25962 , 001_K12.ab1: 25347-25962 , 002_C23.ab1: 25343-25962 , 002_G04.ab1: 25345-25962 , 002_J10.ab1: 25345-25962 , 003_A12.ab1: 25344-25965 , 003_F05.ab1: 25345-25958 , 004_A12.ab1: 25280-25962 , 004_B16.ab1: 25354-25958 , 005_O20.ab1: 25358-25958 , 006_I11.ab1: 25287-25962 , 006_L04.ab1: 25345-25962 , 006_L09.ab1: 25285-25962 , 009_C12.ab1: 25354-25962 , 010_H01.ab1: 25342-25958 , 010_I01.ab1: 25347-25962 , 011_I03.ab1: 25277-25962 , 011_O07.ab1: 25378-25962 , 012_A10.ab1: 25316-25958 , 012_E20.ab1: 25343-25962 , 012_H20.ab1: 25500-25962 , 013_H15.ab1: 25343-25962 , 013_N11.ab1: 25293-25962 , 014_C18.ab1: 25343-25962 , 014_N11.ab1: 25280-25962 , 014_P10.ab1: 25344-25962 , 015_P14.ab1: 25349-25962 , 016_B10.ab1: 25343-25962 , 017_P18.ab1: 25347-25962 , 018_B05.ab1: 25343-25962 , 018_P07.ab1: 25349-25962 , 019_B12.ab1: 25352-25962 , 020_K08.ab1: 25343-25962 , 021_B21.ab1: 25349-25962 , 021_C18.ab1: 25352-25962 , 021_D22.ab1: 25345-25958 , 021_I03.ab1: 25345-25962 , 022_F08.ab1: 25602-25955 , 022_L04.ab1: 25350-25962 , 024_H09.ab1: 25343-25962 , 024_K22.ab1: 25377-25962 , 024_P14.ab1: 25346-25961 , 025_B15.ab1: 25343-25962 , 025_G10.ab1: 25352-25962 , 025_K23.ab1: 25378-25962 , 025_M16.ab1: 25352-25962 , 026_P03.ab1: 25343-25962 , 027_E20.ab1: 25345-25962 , 028_I20.ab1: 25334-25962 , 031_L13.ab1: 25343-25962 , 031_O08.ab1: 25375-25962 , 032_D20.ab1: 25347-25962 , 032_H01.ab1: 25375-25962 , 033_K06.ab1: 25291-25962 , 033_M15.ab1: 25345-25962 , 035_C23.ab1: 25343-25962 , 036_P02.ab1: 25343-25962 , 037_I10.ab1: 25347-25962 , 037_O22.ab1: 25328-25962 , 038_N13.ab1: 25352-25962 , 039_M22.ab1: 25391-25962 , 040_D17.ab1: 25343-25962 , 041_L04.ab1: 25287-25962 , 041_N23.ab1: 25383-25962 , 042_G17.ab1: 25343-25962 , 042_I06.ab1: 25287-25962 , 044_A01.ab1: 25343-25962 , 044_H21.ab1: 25343-25962 , 044_K05.ab1: 25343-25958 , 044_P19.ab1: 25343-25962 , 045_E15.ab1: 25343-25962 , 045_P20.ab1: 25342-25958 , 046_E13.ab1: 25378-25962 , 046_K24.ab1: 25344-25962 , 047_H03.ab1: 25352-25962 , 048_K22.ab1: 25334-25962 , 051_A05.ab1: 25349-25931 , 051_O19.ab1: 25287-25958 , 053_D16.ab1: 25352-25962

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000083_020 0.0 - - hypothetical protein JCGZ_24970 [Jatropha curcas]
2 Hb_005605_010 0.0365954722 - - hypothetical protein POPTR_0019s13220g [Populus trichocarpa]
3 Hb_001823_010 0.0404332164 - - PREDICTED: ribosome-inactivating protein cucurmosin-like [Jatropha curcas]
4 Hb_006901_010 0.0408563632 - - hypothetical protein JCGZ_20722 [Jatropha curcas]
5 Hb_000482_170 0.0422232984 transcription factor TF Family: C2C2-GATA GATA nirate-inducible carbon-metabolism involved protein [Populus nigra x Populus x canadensis]
6 Hb_005245_110 0.0517518082 - - hypothetical protein CISIN_1g0225141mg [Citrus sinensis]
7 Hb_002014_140 0.054343853 transcription factor TF Family: M-type mads box protein, putative [Ricinus communis]
8 Hb_004837_230 0.0548623255 - - unknown [Populus trichocarpa]
9 Hb_002893_200 0.0630942023 - - aldehyde dehydrogenase, putative [Ricinus communis]
10 Hb_185830_050 0.0635082062 - - PREDICTED: probable galactinol--sucrose galactosyltransferase 2 [Jatropha curcas]
11 Hb_008566_060 0.0647066088 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000640_090 0.0718383725 - - PREDICTED: calvin cycle protein CP12-2, chloroplastic-like [Jatropha curcas]
13 Hb_004525_010 0.0719322237 - - late embryogenesis abundant, putative [Ricinus communis]
14 Hb_001279_380 0.0725694939 - - PREDICTED: uncharacterized protein LOC105115824 isoform X1 [Populus euphratica]
15 Hb_003921_010 0.0726181643 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001433_080 0.0736634541 - - Pectinesterase precursor, putative [Ricinus communis]
17 Hb_001736_010 0.0800934788 - - ring finger protein, putative [Ricinus communis]
18 Hb_000334_290 0.0803747563 - - monovalent cation:proton antiporter, putative [Ricinus communis]
19 Hb_000985_150 0.0824060962 - - PREDICTED: subtilisin-like protease SBT5.3 [Jatropha curcas]
20 Hb_000313_130 0.0824126857 - - zinc finger protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000083_020 Hb_000083_020 Hb_005605_010 Hb_005605_010 Hb_000083_020--Hb_005605_010 Hb_001823_010 Hb_001823_010 Hb_000083_020--Hb_001823_010 Hb_006901_010 Hb_006901_010 Hb_000083_020--Hb_006901_010 Hb_000482_170 Hb_000482_170 Hb_000083_020--Hb_000482_170 Hb_005245_110 Hb_005245_110 Hb_000083_020--Hb_005245_110 Hb_002014_140 Hb_002014_140 Hb_000083_020--Hb_002014_140 Hb_005605_010--Hb_005245_110 Hb_005605_010--Hb_000482_170 Hb_004837_230 Hb_004837_230 Hb_005605_010--Hb_004837_230 Hb_005605_010--Hb_006901_010 Hb_003921_010 Hb_003921_010 Hb_005605_010--Hb_003921_010 Hb_001736_010 Hb_001736_010 Hb_001823_010--Hb_001736_010 Hb_001823_010--Hb_000482_170 Hb_001823_010--Hb_005245_110 Hb_000003_490 Hb_000003_490 Hb_001823_010--Hb_000003_490 Hb_001823_010--Hb_005605_010 Hb_006901_010--Hb_002014_140 Hb_006901_010--Hb_000482_170 Hb_002893_200 Hb_002893_200 Hb_006901_010--Hb_002893_200 Hb_000334_290 Hb_000334_290 Hb_006901_010--Hb_000334_290 Hb_000482_170--Hb_002014_140 Hb_000482_170--Hb_005245_110 Hb_005245_110--Hb_003921_010 Hb_005245_110--Hb_004837_230 Hb_002014_140--Hb_002893_200 Hb_001279_380 Hb_001279_380 Hb_002014_140--Hb_001279_380 Hb_002014_140--Hb_000334_290 Hb_000139_010 Hb_000139_010 Hb_002014_140--Hb_000139_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 4.99498 2969.3 249.814 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.26467 0 0 1.66373 4964.26

CAGE analysis