Hb_002893_200

Information

Type -
Description -
Location Contig2893: 148736-156449
Sequence    

Annotation

kegg
ID rcu:RCOM_1053300
description aldehyde dehydrogenase, putative (EC:1.2.1.36)
nr
ID XP_002514327.1
description aldehyde dehydrogenase, putative [Ricinus communis]
swissprot
ID Q9SU63
description Aldehyde dehydrogenase family 2 member B4, mitochondrial OS=Arabidopsis thaliana GN=ALDH2B4 PE=2 SV=1
trembl
ID B9RKT3
description Aldehyde dehydrogenase, putative OS=Ricinus communis GN=RCOM_1053300 PE=3 SV=1
Gene Ontology
ID GO:0001758
description aldehyde dehydrogenase family 2 member c4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30285: 148959-163038
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002893_200 0.0 - - aldehyde dehydrogenase, putative [Ricinus communis]
2 Hb_002014_140 0.038487835 transcription factor TF Family: M-type mads box protein, putative [Ricinus communis]
3 Hb_001279_380 0.041078484 - - PREDICTED: uncharacterized protein LOC105115824 isoform X1 [Populus euphratica]
4 Hb_008566_060 0.0415786387 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000640_090 0.0416711519 - - PREDICTED: calvin cycle protein CP12-2, chloroplastic-like [Jatropha curcas]
6 Hb_107748_010 0.0448655307 - - PREDICTED: 7-deoxyloganetic acid glucosyltransferase-like isoform X2 [Jatropha curcas]
7 Hb_006901_010 0.0465916929 - - hypothetical protein JCGZ_20722 [Jatropha curcas]
8 Hb_000139_010 0.0486004358 - - -
9 Hb_097940_010 0.0511795452 - - pollen protein Ole E I-like protein [Medicago truncatula]
10 Hb_185830_050 0.0528477749 - - PREDICTED: probable galactinol--sucrose galactosyltransferase 2 [Jatropha curcas]
11 Hb_000334_290 0.0533332807 - - monovalent cation:proton antiporter, putative [Ricinus communis]
12 Hb_004525_010 0.0571370234 - - late embryogenesis abundant, putative [Ricinus communis]
13 Hb_007559_020 0.0581229397 - - peptidylprolyl isomerase, putative [Ricinus communis]
14 Hb_000083_020 0.0630942023 - - hypothetical protein JCGZ_24970 [Jatropha curcas]
15 Hb_027403_010 0.0659327544 - - P66 protein [Hevea brasiliensis]
16 Hb_005605_020 0.0670518592 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase EFR [Jatropha curcas]
17 Hb_001046_060 0.0718753245 - - PREDICTED: UDP-glucose flavonoid 3-O-glucosyltransferase 7-like [Fragaria vesca subsp. vesca]
18 Hb_005605_010 0.0726130109 - - hypothetical protein POPTR_0019s13220g [Populus trichocarpa]
19 Hb_001104_080 0.0736862865 - - peroxiredoxin, putative [Ricinus communis]
20 Hb_000825_010 0.0742372645 - - PREDICTED: trans-cinnamate 4-monooxygenase [Jatropha curcas]

Gene co-expression network

sample Hb_002893_200 Hb_002893_200 Hb_002014_140 Hb_002014_140 Hb_002893_200--Hb_002014_140 Hb_001279_380 Hb_001279_380 Hb_002893_200--Hb_001279_380 Hb_008566_060 Hb_008566_060 Hb_002893_200--Hb_008566_060 Hb_000640_090 Hb_000640_090 Hb_002893_200--Hb_000640_090 Hb_107748_010 Hb_107748_010 Hb_002893_200--Hb_107748_010 Hb_006901_010 Hb_006901_010 Hb_002893_200--Hb_006901_010 Hb_002014_140--Hb_006901_010 Hb_002014_140--Hb_001279_380 Hb_000334_290 Hb_000334_290 Hb_002014_140--Hb_000334_290 Hb_000139_010 Hb_000139_010 Hb_002014_140--Hb_000139_010 Hb_000482_170 Hb_000482_170 Hb_002014_140--Hb_000482_170 Hb_001279_380--Hb_000139_010 Hb_097940_010 Hb_097940_010 Hb_001279_380--Hb_097940_010 Hb_007559_020 Hb_007559_020 Hb_001279_380--Hb_007559_020 Hb_001279_380--Hb_008566_060 Hb_027403_010 Hb_027403_010 Hb_001279_380--Hb_027403_010 Hb_185830_050 Hb_185830_050 Hb_008566_060--Hb_185830_050 Hb_008566_060--Hb_000139_010 Hb_008566_060--Hb_027403_010 Hb_008566_060--Hb_097940_010 Hb_000640_090--Hb_107748_010 Hb_005605_020 Hb_005605_020 Hb_000640_090--Hb_005605_020 Hb_001046_060 Hb_001046_060 Hb_000640_090--Hb_001046_060 Hb_000640_090--Hb_008566_060 Hb_003337_080 Hb_003337_080 Hb_000640_090--Hb_003337_080 Hb_107748_010--Hb_005605_020 Hb_107748_010--Hb_001046_060 Hb_000805_080 Hb_000805_080 Hb_107748_010--Hb_000805_080 Hb_001104_080 Hb_001104_080 Hb_107748_010--Hb_001104_080 Hb_006901_010--Hb_000482_170 Hb_000083_020 Hb_000083_020 Hb_006901_010--Hb_000083_020 Hb_005605_010 Hb_005605_010 Hb_006901_010--Hb_005605_010 Hb_006901_010--Hb_000334_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.00893595 8.08361 1.21622 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0246015 0.0193566 0 0.00770687 16.8953

CAGE analysis