Hb_004525_010

Information

Type -
Description -
Location Contig4525: 12698-15190
Sequence    

Annotation

kegg
ID rcu:RCOM_0536090
description late embryogenesis abundant, putative
nr
ID XP_002521572.1
description late embryogenesis abundant, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S6F3
description Late embryogenesis abundant, putative OS=Ricinus communis GN=RCOM_0536090 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43218: 12692-15012 , PASA_asmbl_43219: 12692-15012 , PASA_asmbl_43220: 13804-14190
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004525_010 0.0 - - late embryogenesis abundant, putative [Ricinus communis]
2 Hb_000334_290 0.0569858337 - - monovalent cation:proton antiporter, putative [Ricinus communis]
3 Hb_002893_200 0.0571370234 - - aldehyde dehydrogenase, putative [Ricinus communis]
4 Hb_004837_230 0.0593466347 - - unknown [Populus trichocarpa]
5 Hb_000985_150 0.0615641531 - - PREDICTED: subtilisin-like protease SBT5.3 [Jatropha curcas]
6 Hb_107748_010 0.0615966274 - - PREDICTED: 7-deoxyloganetic acid glucosyltransferase-like isoform X2 [Jatropha curcas]
7 Hb_006901_010 0.064919192 - - hypothetical protein JCGZ_20722 [Jatropha curcas]
8 Hb_002014_140 0.0660088248 transcription factor TF Family: M-type mads box protein, putative [Ricinus communis]
9 Hb_005605_010 0.0660343669 - - hypothetical protein POPTR_0019s13220g [Populus trichocarpa]
10 Hb_001006_160 0.0674694952 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
11 Hb_000640_090 0.0705222594 - - PREDICTED: calvin cycle protein CP12-2, chloroplastic-like [Jatropha curcas]
12 Hb_006665_020 0.0716365027 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4-like [Jatropha curcas]
13 Hb_000083_020 0.0719322237 - - hypothetical protein JCGZ_24970 [Jatropha curcas]
14 Hb_000482_170 0.0726823972 transcription factor TF Family: C2C2-GATA GATA nirate-inducible carbon-metabolism involved protein [Populus nigra x Populus x canadensis]
15 Hb_000254_020 0.0749378205 - - hypothetical protein CISIN_1g007892mg [Citrus sinensis]
16 Hb_000047_100 0.0804800755 transcription factor TF Family: GRF conserved hypothetical protein [Ricinus communis]
17 Hb_005276_080 0.0810757911 - - PREDICTED: chloroplast stem-loop binding protein of 41 kDa a, chloroplastic [Jatropha curcas]
18 Hb_001433_080 0.0837117758 - - Pectinesterase precursor, putative [Ricinus communis]
19 Hb_000676_320 0.0845805032 - - MADS-box transcription factor, partial [Clutia sp. DAV B80.252/F1980.8371]
20 Hb_000915_250 0.0849784381 - - chloroplast latex aldolase-like protein [Manihot esculenta]

Gene co-expression network

sample Hb_004525_010 Hb_004525_010 Hb_000334_290 Hb_000334_290 Hb_004525_010--Hb_000334_290 Hb_002893_200 Hb_002893_200 Hb_004525_010--Hb_002893_200 Hb_004837_230 Hb_004837_230 Hb_004525_010--Hb_004837_230 Hb_000985_150 Hb_000985_150 Hb_004525_010--Hb_000985_150 Hb_107748_010 Hb_107748_010 Hb_004525_010--Hb_107748_010 Hb_006901_010 Hb_006901_010 Hb_004525_010--Hb_006901_010 Hb_000334_290--Hb_000985_150 Hb_002014_140 Hb_002014_140 Hb_000334_290--Hb_002014_140 Hb_000334_290--Hb_006901_010 Hb_000334_290--Hb_002893_200 Hb_082402_020 Hb_082402_020 Hb_000334_290--Hb_082402_020 Hb_002893_200--Hb_002014_140 Hb_001279_380 Hb_001279_380 Hb_002893_200--Hb_001279_380 Hb_008566_060 Hb_008566_060 Hb_002893_200--Hb_008566_060 Hb_000640_090 Hb_000640_090 Hb_002893_200--Hb_000640_090 Hb_002893_200--Hb_107748_010 Hb_002893_200--Hb_006901_010 Hb_005605_010 Hb_005605_010 Hb_004837_230--Hb_005605_010 Hb_005245_110 Hb_005245_110 Hb_004837_230--Hb_005245_110 Hb_000083_020 Hb_000083_020 Hb_004837_230--Hb_000083_020 Hb_007101_120 Hb_007101_120 Hb_004837_230--Hb_007101_120 Hb_000482_170 Hb_000482_170 Hb_004837_230--Hb_000482_170 Hb_000985_150--Hb_000482_170 Hb_008484_080 Hb_008484_080 Hb_000985_150--Hb_008484_080 Hb_000948_240 Hb_000948_240 Hb_000985_150--Hb_000948_240 Hb_000985_150--Hb_006901_010 Hb_107748_010--Hb_000640_090 Hb_005605_020 Hb_005605_020 Hb_107748_010--Hb_005605_020 Hb_001046_060 Hb_001046_060 Hb_107748_010--Hb_001046_060 Hb_000805_080 Hb_000805_080 Hb_107748_010--Hb_000805_080 Hb_001104_080 Hb_001104_080 Hb_107748_010--Hb_001104_080 Hb_006901_010--Hb_002014_140 Hb_006901_010--Hb_000482_170 Hb_006901_010--Hb_000083_020 Hb_006901_010--Hb_005605_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.148207 26.584 4.00811 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0282774 0.289218 0.0838614 0.0798331 46.7503

CAGE analysis