Hb_000985_150

Information

Type -
Description -
Location Contig985: 205146-210405
Sequence    

Annotation

kegg
ID pop:POPTR_0014s16970g
description POPTRDRAFT_573140; subtilisin-like protease family protein
nr
ID XP_012083905.1
description PREDICTED: subtilisin-like protease SBT5.3 [Jatropha curcas]
swissprot
ID Q9ZSP5
description Subtilisin-like protease SBT5.3 OS=Arabidopsis thaliana GN=AIR3 PE=2 SV=1
trembl
ID A0A067LLC2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15019 PE=4 SV=1
Gene Ontology
ID GO:0004252
description subtilisin-like protease

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64630: 205099-210442
cDNA
(Sanger)
(ID:Location)		 031_M06.ab1: 205099-208173

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000985_150 0.0 - - PREDICTED: subtilisin-like protease SBT5.3 [Jatropha curcas]
2 Hb_000334_290 0.0422546247 - - monovalent cation:proton antiporter, putative [Ricinus communis]
3 Hb_000482_170 0.0586379118 transcription factor TF Family: C2C2-GATA GATA nirate-inducible carbon-metabolism involved protein [Populus nigra x Populus x canadensis]
4 Hb_008484_080 0.0615433268 - - PREDICTED: crocetin glucosyltransferase, chloroplastic-like [Jatropha curcas]
5 Hb_004525_010 0.0615641531 - - late embryogenesis abundant, putative [Ricinus communis]
6 Hb_000948_240 0.0653095436 - - conserved hypothetical protein [Ricinus communis]
7 Hb_006901_010 0.0667721767 - - hypothetical protein JCGZ_20722 [Jatropha curcas]
8 Hb_004837_230 0.0677484123 - - unknown [Populus trichocarpa]
9 Hb_002014_140 0.0718713404 transcription factor TF Family: M-type mads box protein, putative [Ricinus communis]
10 Hb_005605_010 0.0745556214 - - hypothetical protein POPTR_0019s13220g [Populus trichocarpa]
11 Hb_003050_380 0.0747423072 - - hypothetical protein POPTR_0007s03380g [Populus trichocarpa]
12 Hb_099182_010 0.0748735532 - - PREDICTED: uncharacterized protein LOC101214783 [Cucumis sativus]
13 Hb_007101_120 0.0756884905 - - PREDICTED: uncharacterized protein LOC105649846 [Jatropha curcas]
14 Hb_001862_040 0.0757747359 - - heat shock protein 70 (HSP70)-interacting protein, putative [Ricinus communis]
15 Hb_002893_200 0.0777470376 - - aldehyde dehydrogenase, putative [Ricinus communis]
16 Hb_082402_020 0.0778142369 - - PREDICTED: aluminum-activated malate transporter 8-like [Jatropha curcas]
17 Hb_001710_010 0.0778867025 - - Uncharacterized protein TCM_001832 [Theobroma cacao]
18 Hb_002592_040 0.0780909357 - - ACC oxidase 3 [Hevea brasiliensis]
19 Hb_001006_160 0.079219174 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
20 Hb_000083_020 0.0824060962 - - hypothetical protein JCGZ_24970 [Jatropha curcas]

Gene co-expression network

sample Hb_000985_150 Hb_000985_150 Hb_000334_290 Hb_000334_290 Hb_000985_150--Hb_000334_290 Hb_000482_170 Hb_000482_170 Hb_000985_150--Hb_000482_170 Hb_008484_080 Hb_008484_080 Hb_000985_150--Hb_008484_080 Hb_004525_010 Hb_004525_010 Hb_000985_150--Hb_004525_010 Hb_000948_240 Hb_000948_240 Hb_000985_150--Hb_000948_240 Hb_006901_010 Hb_006901_010 Hb_000985_150--Hb_006901_010 Hb_002014_140 Hb_002014_140 Hb_000334_290--Hb_002014_140 Hb_000334_290--Hb_006901_010 Hb_002893_200 Hb_002893_200 Hb_000334_290--Hb_002893_200 Hb_000334_290--Hb_004525_010 Hb_082402_020 Hb_082402_020 Hb_000334_290--Hb_082402_020 Hb_000482_170--Hb_006901_010 Hb_005605_010 Hb_005605_010 Hb_000482_170--Hb_005605_010 Hb_000083_020 Hb_000083_020 Hb_000482_170--Hb_000083_020 Hb_000482_170--Hb_002014_140 Hb_005245_110 Hb_005245_110 Hb_000482_170--Hb_005245_110 Hb_001823_010 Hb_001823_010 Hb_000482_170--Hb_001823_010 Hb_099182_010 Hb_099182_010 Hb_008484_080--Hb_099182_010 Hb_023313_050 Hb_023313_050 Hb_008484_080--Hb_023313_050 Hb_000191_090 Hb_000191_090 Hb_008484_080--Hb_000191_090 Hb_040323_010 Hb_040323_010 Hb_008484_080--Hb_040323_010 Hb_002434_040 Hb_002434_040 Hb_008484_080--Hb_002434_040 Hb_000977_250 Hb_000977_250 Hb_008484_080--Hb_000977_250 Hb_004525_010--Hb_002893_200 Hb_004837_230 Hb_004837_230 Hb_004525_010--Hb_004837_230 Hb_107748_010 Hb_107748_010 Hb_004525_010--Hb_107748_010 Hb_004525_010--Hb_006901_010 Hb_002592_040 Hb_002592_040 Hb_000948_240--Hb_002592_040 Hb_001862_040 Hb_001862_040 Hb_000948_240--Hb_001862_040 Hb_005375_090 Hb_005375_090 Hb_000948_240--Hb_005375_090 Hb_003747_090 Hb_003747_090 Hb_000948_240--Hb_003747_090 Hb_000948_240--Hb_000334_290 Hb_013405_110 Hb_013405_110 Hb_000948_240--Hb_013405_110 Hb_006901_010--Hb_002014_140 Hb_006901_010--Hb_000083_020 Hb_006901_010--Hb_002893_200 Hb_006901_010--Hb_005605_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.00663662 11.7419 1.99514 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0731184 0.0143839 0.0274029 0.0114264 17.5982

CAGE analysis