Hb_000349_150

Information

Type -
Description -
Location Contig349: 152268-154663
Sequence    

Annotation

kegg
ID atr:s00032p00219670
description AMTR_s00032p00219670; hypothetical protein
nr
ID XP_012087232.1
description PREDICTED: geraniol 8-hydroxylase-like [Jatropha curcas]
swissprot
ID Q6Z5I7
description Oryzalexin E synthase OS=Oryza sativa subsp. japonica GN=CYP76M6 PE=1 SV=1
trembl
ID A0A068UMU0
description Coffea canephora DH200=94 genomic scaffold, scaffold_41 OS=Coffea canephora GN=GSCOC_T00030325001 PE=3 SV=1
Gene Ontology
ID GO:0016491
description geraniol 8-hydroxylase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36304: 152489-152928 , PASA_asmbl_36305: 152942-153851 , PASA_asmbl_36306: 153891-153989
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000349_150 0.0 - - PREDICTED: geraniol 8-hydroxylase-like [Jatropha curcas]
2 Hb_004855_030 0.0354211509 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
3 Hb_000922_110 0.0400211043 transcription factor TF Family: MYB PREDICTED: transcription factor WER-like [Jatropha curcas]
4 Hb_011689_070 0.0494346684 - - PREDICTED: pyruvate, phosphate dikinase, chloroplastic [Jatropha curcas]
5 Hb_020805_090 0.0543169228 - - glyceraldehyde 3-phosphate dehydrogenase, putative [Ricinus communis]
6 Hb_004150_020 0.0613919448 - - PREDICTED: subtilisin-like protease SBT1.7 [Jatropha curcas]
7 Hb_000977_260 0.0691826504 - - hypothetical protein CISIN_1g047084mg, partial [Citrus sinensis]
8 Hb_000893_040 0.0691915165 transcription factor TF Family: bHLH hypothetical protein POPTR_0011s05320g [Populus trichocarpa]
9 Hb_000083_010 0.0708491888 - - -
10 Hb_001210_110 0.0712934874 - - PREDICTED: gibberellin 3-beta-dioxygenase 1 [Jatropha curcas]
11 Hb_020859_010 0.0718315266 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 isoform X6 [Populus euphratica]
12 Hb_008489_030 0.0736071025 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
13 Hb_000832_050 0.0754715396 - - ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Marila laxiflora]
14 Hb_015981_010 0.0768939122 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
15 Hb_003251_010 0.0770165682 - - hypothetical protein MIMGU_mgv1a025126mg [Erythranthe guttata]
16 Hb_003208_010 0.078593187 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
17 Hb_000398_110 0.0808663612 transcription factor TF Family: zf-HD PREDICTED: zinc-finger homeodomain protein 4-like [Populus euphratica]
18 Hb_027751_070 0.0816809899 transcription factor TF Family: C2C2-CO-like transcription factor, putative [Ricinus communis]
19 Hb_006040_090 0.0817593315 - - ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Hevea brasiliensis]
20 Hb_003053_090 0.0818000524 - - PREDICTED: carbonic anhydrase, chloroplastic-like [Jatropha curcas]

Gene co-expression network

sample Hb_000349_150 Hb_000349_150 Hb_004855_030 Hb_004855_030 Hb_000349_150--Hb_004855_030 Hb_000922_110 Hb_000922_110 Hb_000349_150--Hb_000922_110 Hb_011689_070 Hb_011689_070 Hb_000349_150--Hb_011689_070 Hb_020805_090 Hb_020805_090 Hb_000349_150--Hb_020805_090 Hb_004150_020 Hb_004150_020 Hb_000349_150--Hb_004150_020 Hb_000977_260 Hb_000977_260 Hb_000349_150--Hb_000977_260 Hb_004855_030--Hb_020805_090 Hb_003251_010 Hb_003251_010 Hb_004855_030--Hb_003251_010 Hb_004855_030--Hb_000977_260 Hb_003208_010 Hb_003208_010 Hb_004855_030--Hb_003208_010 Hb_000893_040 Hb_000893_040 Hb_004855_030--Hb_000893_040 Hb_000922_110--Hb_011689_070 Hb_000922_110--Hb_004150_020 Hb_006040_090 Hb_006040_090 Hb_000922_110--Hb_006040_090 Hb_000922_110--Hb_004855_030 Hb_001210_110 Hb_001210_110 Hb_000922_110--Hb_001210_110 Hb_011689_070--Hb_020805_090 Hb_011689_070--Hb_004855_030 Hb_003732_030 Hb_003732_030 Hb_011689_070--Hb_003732_030 Hb_011689_070--Hb_004150_020 Hb_020805_090--Hb_003208_010 Hb_020805_090--Hb_000977_260 Hb_020805_090--Hb_003251_010 Hb_003053_090 Hb_003053_090 Hb_004150_020--Hb_003053_090 Hb_020859_010 Hb_020859_010 Hb_004150_020--Hb_020859_010 Hb_015981_010 Hb_015981_010 Hb_004150_020--Hb_015981_010 Hb_004150_020--Hb_000893_040 Hb_008489_030 Hb_008489_030 Hb_004150_020--Hb_008489_030 Hb_004150_020--Hb_000977_260 Hb_000977_260--Hb_003251_010 Hb_000977_260--Hb_003208_010 Hb_000977_260--Hb_000893_040 Hb_000398_110 Hb_000398_110 Hb_000977_260--Hb_000398_110 Hb_000977_260--Hb_008489_030 Hb_000977_260--Hb_020859_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0941454 1.43942 0.583571 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0248488 11.284

CAGE analysis