Hb_000922_110

Information

Type transcription factor
Description TF Family: MYB
Location Contig922: 143357-145316
Sequence    

Annotation

kegg
ID vvi:100244963
description transcription factor WER
nr
ID XP_012080531.1
description PREDICTED: transcription factor WER-like [Jatropha curcas]
swissprot
ID Q9SEI0
description Transcription factor WER OS=Arabidopsis thaliana GN=WER PE=1 SV=1
trembl
ID A0A067K7V1
description MYB family protein OS=Jatropha curcas GN=JCGZ_11479 PE=4 SV=1
Gene Ontology
ID GO:0003677
description transcription factor wer-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62484: 144917-145426
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000922_110 0.0 transcription factor TF Family: MYB PREDICTED: transcription factor WER-like [Jatropha curcas]
2 Hb_000349_150 0.0400211043 - - PREDICTED: geraniol 8-hydroxylase-like [Jatropha curcas]
3 Hb_011689_070 0.0503171232 - - PREDICTED: pyruvate, phosphate dikinase, chloroplastic [Jatropha curcas]
4 Hb_004150_020 0.071761402 - - PREDICTED: subtilisin-like protease SBT1.7 [Jatropha curcas]
5 Hb_006040_090 0.0721548909 - - ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Hevea brasiliensis]
6 Hb_004855_030 0.0721836798 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
7 Hb_001210_110 0.0761913216 - - PREDICTED: gibberellin 3-beta-dioxygenase 1 [Jatropha curcas]
8 Hb_003732_030 0.0803560019 - - gibberellin 20-oxidase, putative [Ricinus communis]
9 Hb_015981_010 0.0808867769 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
10 Hb_020859_010 0.0820354942 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 isoform X6 [Populus euphratica]
11 Hb_003053_090 0.0839650528 - - PREDICTED: carbonic anhydrase, chloroplastic-like [Jatropha curcas]
12 Hb_008489_030 0.0861996114 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
13 Hb_020805_090 0.0865248985 - - glyceraldehyde 3-phosphate dehydrogenase, putative [Ricinus communis]
14 Hb_000893_040 0.0871451916 transcription factor TF Family: bHLH hypothetical protein POPTR_0011s05320g [Populus trichocarpa]
15 Hb_006495_030 0.0873787059 - - PREDICTED: isoflavone 2'-hydroxylase-like [Vitis vinifera]
16 Hb_003053_100 0.0883387965 transcription factor TF Family: MYB-related PREDICTED: transcription factor WER-like [Jatropha curcas]
17 Hb_161881_010 0.0894948733 - - laccase, putative [Ricinus communis]
18 Hb_000832_050 0.0932826052 - - ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Marila laxiflora]
19 Hb_002010_010 0.0957631519 - - anthocyanidin 3-O-glucosyltransferase [Hevea brasiliensis]
20 Hb_000977_260 0.0959028912 - - hypothetical protein CISIN_1g047084mg, partial [Citrus sinensis]

Gene co-expression network

sample Hb_000922_110 Hb_000922_110 Hb_000349_150 Hb_000349_150 Hb_000922_110--Hb_000349_150 Hb_011689_070 Hb_011689_070 Hb_000922_110--Hb_011689_070 Hb_004150_020 Hb_004150_020 Hb_000922_110--Hb_004150_020 Hb_006040_090 Hb_006040_090 Hb_000922_110--Hb_006040_090 Hb_004855_030 Hb_004855_030 Hb_000922_110--Hb_004855_030 Hb_001210_110 Hb_001210_110 Hb_000922_110--Hb_001210_110 Hb_000349_150--Hb_004855_030 Hb_000349_150--Hb_011689_070 Hb_020805_090 Hb_020805_090 Hb_000349_150--Hb_020805_090 Hb_000349_150--Hb_004150_020 Hb_000977_260 Hb_000977_260 Hb_000349_150--Hb_000977_260 Hb_011689_070--Hb_020805_090 Hb_011689_070--Hb_004855_030 Hb_003732_030 Hb_003732_030 Hb_011689_070--Hb_003732_030 Hb_011689_070--Hb_004150_020 Hb_003053_090 Hb_003053_090 Hb_004150_020--Hb_003053_090 Hb_020859_010 Hb_020859_010 Hb_004150_020--Hb_020859_010 Hb_015981_010 Hb_015981_010 Hb_004150_020--Hb_015981_010 Hb_000893_040 Hb_000893_040 Hb_004150_020--Hb_000893_040 Hb_008489_030 Hb_008489_030 Hb_004150_020--Hb_008489_030 Hb_004150_020--Hb_000977_260 Hb_006495_030 Hb_006495_030 Hb_006040_090--Hb_006495_030 Hb_006040_090--Hb_001210_110 Hb_006040_090--Hb_003053_090 Hb_003053_100 Hb_003053_100 Hb_006040_090--Hb_003053_100 Hb_002040_070 Hb_002040_070 Hb_006040_090--Hb_002040_070 Hb_006040_090--Hb_004150_020 Hb_004855_030--Hb_020805_090 Hb_003251_010 Hb_003251_010 Hb_004855_030--Hb_003251_010 Hb_004855_030--Hb_000977_260 Hb_003208_010 Hb_003208_010 Hb_004855_030--Hb_003208_010 Hb_004855_030--Hb_000893_040 Hb_001210_110--Hb_002040_070 Hb_027751_070 Hb_027751_070 Hb_001210_110--Hb_027751_070 Hb_005656_220 Hb_005656_220 Hb_001210_110--Hb_005656_220 Hb_000083_010 Hb_000083_010 Hb_001210_110--Hb_000083_010 Hb_001210_110--Hb_006495_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.450055 3.65131 1.29845 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0587424 34.8756

CAGE analysis