Hb_003732_030

Information

Type -
Description -
Location Contig3732: 47284-49228
Sequence    

Annotation

kegg
ID rcu:RCOM_1498120
description gibberellin 20-oxidase, putative (EC:1.14.11.15)
nr
ID XP_002510873.1
description gibberellin 20-oxidase, putative [Ricinus communis]
swissprot
ID Q39111
description Gibberellin 20 oxidase 2 OS=Arabidopsis thaliana GN=GA20OX2 PE=2 SV=1
trembl
ID B9R9J8
description Gibberellin 20-oxidase, putative OS=Ricinus communis GN=RCOM_1498120 PE=3 SV=1
Gene Ontology
ID GO:0005506
description gibberellin 20-oxidase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38163: 47415-49345
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003732_030 0.0 - - gibberellin 20-oxidase, putative [Ricinus communis]
2 Hb_002010_010 0.0688955621 - - anthocyanidin 3-O-glucosyltransferase [Hevea brasiliensis]
3 Hb_004030_010 0.0713343895 - - hypothetical protein CICLE_v10013050mg [Citrus clementina]
4 Hb_011689_070 0.0717647307 - - PREDICTED: pyruvate, phosphate dikinase, chloroplastic [Jatropha curcas]
5 Hb_000776_120 0.0755868905 - - PREDICTED: cytochrome P450 78A5 [Jatropha curcas]
6 Hb_001775_010 0.0776811241 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000922_110 0.0803560019 transcription factor TF Family: MYB PREDICTED: transcription factor WER-like [Jatropha curcas]
8 Hb_008864_050 0.0808397077 - - protein binding protein, putative [Ricinus communis]
9 Hb_003947_020 0.081305802 - - Serine/threonine-protein kinase-transforming protein raf, putative [Ricinus communis]
10 Hb_000349_150 0.0886439708 - - PREDICTED: geraniol 8-hydroxylase-like [Jatropha curcas]
11 Hb_000768_080 0.0960166413 - - Mlo protein [Hevea brasiliensis]
12 Hb_161881_010 0.0973577538 - - laccase, putative [Ricinus communis]
13 Hb_001610_100 0.0974108008 - - Xylem serine proteinase 1 precursor, putative [Ricinus communis]
14 Hb_004855_030 0.0981400893 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
15 Hb_004920_080 0.1006326729 - - PREDICTED: calvin cycle protein CP12-2, chloroplastic-like [Jatropha curcas]
16 Hb_063885_010 0.1011830799 - - Xylem serine proteinase 1 precursor, putative [Ricinus communis]
17 Hb_048694_010 0.1034979608 - - catalytic, putative [Ricinus communis]
18 Hb_010021_040 0.1035684271 - - PREDICTED: uncharacterized protein LOC105630811 [Jatropha curcas]
19 Hb_005194_050 0.1055463434 transcription factor TF Family: GRAS SCL domain class transcription factor [Theobroma cacao]
20 Hb_002997_060 0.1066806873 - - hypothetical protein POPTR_0011s10730g [Populus trichocarpa]

Gene co-expression network

sample Hb_003732_030 Hb_003732_030 Hb_002010_010 Hb_002010_010 Hb_003732_030--Hb_002010_010 Hb_004030_010 Hb_004030_010 Hb_003732_030--Hb_004030_010 Hb_011689_070 Hb_011689_070 Hb_003732_030--Hb_011689_070 Hb_000776_120 Hb_000776_120 Hb_003732_030--Hb_000776_120 Hb_001775_010 Hb_001775_010 Hb_003732_030--Hb_001775_010 Hb_000922_110 Hb_000922_110 Hb_003732_030--Hb_000922_110 Hb_161881_010 Hb_161881_010 Hb_002010_010--Hb_161881_010 Hb_007101_090 Hb_007101_090 Hb_002010_010--Hb_007101_090 Hb_000336_130 Hb_000336_130 Hb_002010_010--Hb_000336_130 Hb_001999_330 Hb_001999_330 Hb_002010_010--Hb_001999_330 Hb_002010_010--Hb_004030_010 Hb_004030_010--Hb_000776_120 Hb_004030_010--Hb_161881_010 Hb_004030_010--Hb_011689_070 Hb_008864_050 Hb_008864_050 Hb_004030_010--Hb_008864_050 Hb_000349_150 Hb_000349_150 Hb_011689_070--Hb_000349_150 Hb_011689_070--Hb_000922_110 Hb_020805_090 Hb_020805_090 Hb_011689_070--Hb_020805_090 Hb_004855_030 Hb_004855_030 Hb_011689_070--Hb_004855_030 Hb_004150_020 Hb_004150_020 Hb_011689_070--Hb_004150_020 Hb_005194_050 Hb_005194_050 Hb_000776_120--Hb_005194_050 Hb_000776_120--Hb_008864_050 Hb_000776_120--Hb_002010_010 Hb_000768_080 Hb_000768_080 Hb_000776_120--Hb_000768_080 Hb_001775_010--Hb_000768_080 Hb_001775_010--Hb_008864_050 Hb_001080_290 Hb_001080_290 Hb_001775_010--Hb_001080_290 Hb_010021_040 Hb_010021_040 Hb_001775_010--Hb_010021_040 Hb_002600_110 Hb_002600_110 Hb_001775_010--Hb_002600_110 Hb_001951_050 Hb_001951_050 Hb_001775_010--Hb_001951_050 Hb_000922_110--Hb_000349_150 Hb_000922_110--Hb_004150_020 Hb_006040_090 Hb_006040_090 Hb_000922_110--Hb_006040_090 Hb_000922_110--Hb_004855_030 Hb_001210_110 Hb_001210_110 Hb_000922_110--Hb_001210_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0554396 1.75603 6.09249 5.52237 0 0.0244115
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0281405 0.0664197 0.0417339 0.0970966 78.0949

CAGE analysis