Hb_008864_050

Information

Type -
Description -
Location Contig8864: 40244-40996
Sequence    

Annotation

kegg
ID rcu:RCOM_0938620
description protein binding protein, putative
nr
ID XP_002519112.1
description protein binding protein, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RZE3
description Protein binding protein, putative OS=Ricinus communis GN=RCOM_0938620 PE=4 SV=1
Gene Ontology
ID GO:0005622
description protein binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61504: 40264-41073
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008864_050 0.0 - - protein binding protein, putative [Ricinus communis]
2 Hb_001775_010 0.0583267302 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000768_080 0.0598538651 - - Mlo protein [Hevea brasiliensis]
4 Hb_010021_040 0.06214056 - - PREDICTED: uncharacterized protein LOC105630811 [Jatropha curcas]
5 Hb_003732_030 0.0808397077 - - gibberellin 20-oxidase, putative [Ricinus communis]
6 Hb_000776_120 0.0835457755 - - PREDICTED: cytochrome P450 78A5 [Jatropha curcas]
7 Hb_004920_080 0.0925102792 - - PREDICTED: calvin cycle protein CP12-2, chloroplastic-like [Jatropha curcas]
8 Hb_005194_050 0.0952872774 transcription factor TF Family: GRAS SCL domain class transcription factor [Theobroma cacao]
9 Hb_002600_110 0.0992609637 - - hypothetical protein POPTR_0004s10540g [Populus trichocarpa]
10 Hb_001080_290 0.0992656849 - - PSI reaction center subunit II [Citrus sinensis]
11 Hb_000629_110 0.1002637587 - - PREDICTED: protein RTF2 homolog [Jatropha curcas]
12 Hb_001951_050 0.104081103 - - chlorophyll A/B binding protein, putative [Ricinus communis]
13 Hb_002764_020 0.1048742715 - - hypothetical protein JCGZ_24084 [Jatropha curcas]
14 Hb_004030_010 0.1060302442 - - hypothetical protein CICLE_v10013050mg [Citrus clementina]
15 Hb_002445_020 0.1097531789 - - -
16 Hb_000608_160 0.1097919631 transcription factor TF Family: GNAT N-acetyltransferase, putative [Ricinus communis]
17 Hb_048694_010 0.109990392 - - catalytic, putative [Ricinus communis]
18 Hb_009004_020 0.1113069723 - - PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
19 Hb_002010_010 0.1120953936 - - anthocyanidin 3-O-glucosyltransferase [Hevea brasiliensis]
20 Hb_000983_200 0.1124562291 - - PREDICTED: uncharacterized protein LOC105633924 [Jatropha curcas]

Gene co-expression network

sample Hb_008864_050 Hb_008864_050 Hb_001775_010 Hb_001775_010 Hb_008864_050--Hb_001775_010 Hb_000768_080 Hb_000768_080 Hb_008864_050--Hb_000768_080 Hb_010021_040 Hb_010021_040 Hb_008864_050--Hb_010021_040 Hb_003732_030 Hb_003732_030 Hb_008864_050--Hb_003732_030 Hb_000776_120 Hb_000776_120 Hb_008864_050--Hb_000776_120 Hb_004920_080 Hb_004920_080 Hb_008864_050--Hb_004920_080 Hb_001775_010--Hb_000768_080 Hb_001080_290 Hb_001080_290 Hb_001775_010--Hb_001080_290 Hb_001775_010--Hb_010021_040 Hb_002600_110 Hb_002600_110 Hb_001775_010--Hb_002600_110 Hb_001951_050 Hb_001951_050 Hb_001775_010--Hb_001951_050 Hb_000768_080--Hb_002600_110 Hb_000768_080--Hb_010021_040 Hb_000768_080--Hb_001080_290 Hb_002445_020 Hb_002445_020 Hb_000768_080--Hb_002445_020 Hb_010021_040--Hb_004920_080 Hb_018202_040 Hb_018202_040 Hb_010021_040--Hb_018202_040 Hb_005194_050 Hb_005194_050 Hb_010021_040--Hb_005194_050 Hb_002010_010 Hb_002010_010 Hb_003732_030--Hb_002010_010 Hb_004030_010 Hb_004030_010 Hb_003732_030--Hb_004030_010 Hb_011689_070 Hb_011689_070 Hb_003732_030--Hb_011689_070 Hb_003732_030--Hb_000776_120 Hb_003732_030--Hb_001775_010 Hb_000922_110 Hb_000922_110 Hb_003732_030--Hb_000922_110 Hb_000776_120--Hb_005194_050 Hb_000776_120--Hb_004030_010 Hb_000776_120--Hb_002010_010 Hb_000776_120--Hb_000768_080 Hb_000029_390 Hb_000029_390 Hb_004920_080--Hb_000029_390 Hb_002995_060 Hb_002995_060 Hb_004920_080--Hb_002995_060 Hb_000629_110 Hb_000629_110 Hb_004920_080--Hb_000629_110 Hb_004712_230 Hb_004712_230 Hb_004920_080--Hb_004712_230 Hb_005736_030 Hb_005736_030 Hb_004920_080--Hb_005736_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.347481 0.915453 1.28011 0 0.0281223
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 10.4455

CAGE analysis