Hb_005194_050

Information

Type transcription factor
Description TF Family: GRAS
Location Contig5194: 106031-107389
Sequence    

Annotation

kegg
ID tcc:TCM_000764
description SCL domain class transcription factor
nr
ID XP_007047483.1
description SCL domain class transcription factor [Theobroma cacao]
swissprot
ID Q9SN22
description Scarecrow-like protein 32 OS=Arabidopsis thaliana GN=SCL32 PE=2 SV=1
trembl
ID A0A061DGZ9
description SCL domain class transcription factor OS=Theobroma cacao GN=TCM_000764 PE=4 SV=1
Gene Ontology
ID GO:0006351
description scarecrow-like protein 32

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46659: 106029-106243
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005194_050 0.0 transcription factor TF Family: GRAS SCL domain class transcription factor [Theobroma cacao]
2 Hb_000776_120 0.0753142903 - - PREDICTED: cytochrome P450 78A5 [Jatropha curcas]
3 Hb_010021_040 0.0836629981 - - PREDICTED: uncharacterized protein LOC105630811 [Jatropha curcas]
4 Hb_008864_050 0.0952872774 - - protein binding protein, putative [Ricinus communis]
5 Hb_002010_010 0.0963308449 - - anthocyanidin 3-O-glucosyltransferase [Hevea brasiliensis]
6 Hb_003732_030 0.1055463434 - - gibberellin 20-oxidase, putative [Ricinus communis]
7 Hb_161881_010 0.106423909 - - laccase, putative [Ricinus communis]
8 Hb_001775_010 0.1079696912 - - conserved hypothetical protein [Ricinus communis]
9 Hb_004030_010 0.1142655399 - - hypothetical protein CICLE_v10013050mg [Citrus clementina]
10 Hb_004920_080 0.1144870155 - - PREDICTED: calvin cycle protein CP12-2, chloroplastic-like [Jatropha curcas]
11 Hb_000768_080 0.1154161593 - - Mlo protein [Hevea brasiliensis]
12 Hb_000139_030 0.1160923762 - - PREDICTED: uncharacterized protein LOC101254423 [Solanum lycopersicum]
13 Hb_002620_040 0.1233212094 - - PREDICTED: calmodulin-binding receptor-like cytoplasmic kinase 2 [Jatropha curcas]
14 Hb_000029_390 0.1262750712 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
15 Hb_001295_080 0.128768068 - - Protein KES1, putative [Ricinus communis]
16 Hb_093388_010 0.130102087 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1 [Jatropha curcas]
17 Hb_171685_070 0.131073974 - - -
18 Hb_007101_090 0.1318982966 - - PREDICTED: protein ALTERED XYLOGLUCAN 4 [Jatropha curcas]
19 Hb_002764_020 0.1342731906 - - hypothetical protein JCGZ_24084 [Jatropha curcas]
20 Hb_001053_050 0.1352029481 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Vitis vinifera]

Gene co-expression network

sample Hb_005194_050 Hb_005194_050 Hb_000776_120 Hb_000776_120 Hb_005194_050--Hb_000776_120 Hb_010021_040 Hb_010021_040 Hb_005194_050--Hb_010021_040 Hb_008864_050 Hb_008864_050 Hb_005194_050--Hb_008864_050 Hb_002010_010 Hb_002010_010 Hb_005194_050--Hb_002010_010 Hb_003732_030 Hb_003732_030 Hb_005194_050--Hb_003732_030 Hb_161881_010 Hb_161881_010 Hb_005194_050--Hb_161881_010 Hb_000776_120--Hb_003732_030 Hb_004030_010 Hb_004030_010 Hb_000776_120--Hb_004030_010 Hb_000776_120--Hb_008864_050 Hb_000776_120--Hb_002010_010 Hb_000768_080 Hb_000768_080 Hb_000776_120--Hb_000768_080 Hb_010021_040--Hb_008864_050 Hb_001775_010 Hb_001775_010 Hb_010021_040--Hb_001775_010 Hb_010021_040--Hb_000768_080 Hb_004920_080 Hb_004920_080 Hb_010021_040--Hb_004920_080 Hb_018202_040 Hb_018202_040 Hb_010021_040--Hb_018202_040 Hb_008864_050--Hb_001775_010 Hb_008864_050--Hb_000768_080 Hb_008864_050--Hb_003732_030 Hb_008864_050--Hb_004920_080 Hb_002010_010--Hb_161881_010 Hb_002010_010--Hb_003732_030 Hb_007101_090 Hb_007101_090 Hb_002010_010--Hb_007101_090 Hb_000336_130 Hb_000336_130 Hb_002010_010--Hb_000336_130 Hb_001999_330 Hb_001999_330 Hb_002010_010--Hb_001999_330 Hb_002010_010--Hb_004030_010 Hb_003732_030--Hb_004030_010 Hb_011689_070 Hb_011689_070 Hb_003732_030--Hb_011689_070 Hb_003732_030--Hb_001775_010 Hb_000922_110 Hb_000922_110 Hb_003732_030--Hb_000922_110 Hb_012528_040 Hb_012528_040 Hb_161881_010--Hb_012528_040 Hb_000123_070 Hb_000123_070 Hb_161881_010--Hb_000123_070 Hb_161881_010--Hb_000922_110 Hb_161881_010--Hb_003732_030 Hb_161881_010--Hb_004030_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.117305 0.139838 0.154452 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0110122 1.60664

CAGE analysis