Hb_007101_090

Information

Type -
Description -
Location Contig7101: 45267-47236
Sequence    

Annotation

kegg
ID rcu:RCOM_0394070
description hypothetical protein
nr
ID XP_012092051.1
description PREDICTED: protein ALTERED XYLOGLUCAN 4 [Jatropha curcas]
swissprot
ID O04523
description Protein ALTERED XYLOGLUCAN 4 OS=Arabidopsis thaliana GN=AXY4 PE=1 SV=1
trembl
ID A0A067JBV5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21782 PE=4 SV=1
Gene Ontology
ID GO:0005794
description protein altered xyloglucan 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55240: 45991-46591
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007101_090 0.0 - - PREDICTED: protein ALTERED XYLOGLUCAN 4 [Jatropha curcas]
2 Hb_001001_130 0.0628704359 - - hypothetical protein POPTR_0002s12860g [Populus trichocarpa]
3 Hb_052139_010 0.0706725946 - - PREDICTED: glucan endo-1,3-beta-glucosidase, basic isoform-like [Populus euphratica]
4 Hb_000645_270 0.0746726397 - - PREDICTED: uncharacterized protein LOC105122837 isoform X2 [Populus euphratica]
5 Hb_001856_290 0.0772188361 - - hypothetical protein JCGZ_16255 [Jatropha curcas]
6 Hb_001999_330 0.0784244573 - - hypothetical protein PRUPE_ppa022262mg, partial [Prunus persica]
7 Hb_002010_010 0.0801453449 - - anthocyanidin 3-O-glucosyltransferase [Hevea brasiliensis]
8 Hb_001053_050 0.0836985961 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Vitis vinifera]
9 Hb_001610_100 0.0864306218 - - Xylem serine proteinase 1 precursor, putative [Ricinus communis]
10 Hb_031194_020 0.0936071029 - - BnaCnng13030D [Brassica napus]
11 Hb_003947_020 0.0941935633 - - Serine/threonine-protein kinase-transforming protein raf, putative [Ricinus communis]
12 Hb_003622_050 0.0963287397 - - PREDICTED: respiratory burst oxidase homolog protein A-like [Jatropha curcas]
13 Hb_000336_130 0.0972144433 - - Triacylglycerol lipase 2 precursor, putative [Ricinus communis]
14 Hb_015807_020 0.1021026481 - - gibberellin 20-oxidase, putative [Ricinus communis]
15 Hb_001775_010 0.1097086952 - - conserved hypothetical protein [Ricinus communis]
16 Hb_054865_040 0.109919376 - - PREDICTED: auxin-induced protein 15A [Jatropha curcas]
17 Hb_003732_030 0.1104657941 - - gibberellin 20-oxidase, putative [Ricinus communis]
18 Hb_004855_030 0.1111465443 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
19 Hb_000000_090 0.111206255 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001146_030 0.1121994371 - - cytochrome P450, putative [Ricinus communis]

Gene co-expression network

sample Hb_007101_090 Hb_007101_090 Hb_001001_130 Hb_001001_130 Hb_007101_090--Hb_001001_130 Hb_052139_010 Hb_052139_010 Hb_007101_090--Hb_052139_010 Hb_000645_270 Hb_000645_270 Hb_007101_090--Hb_000645_270 Hb_001856_290 Hb_001856_290 Hb_007101_090--Hb_001856_290 Hb_001999_330 Hb_001999_330 Hb_007101_090--Hb_001999_330 Hb_002010_010 Hb_002010_010 Hb_007101_090--Hb_002010_010 Hb_001001_130--Hb_052139_010 Hb_001001_130--Hb_001856_290 Hb_000135_080 Hb_000135_080 Hb_001001_130--Hb_000135_080 Hb_012528_040 Hb_012528_040 Hb_001001_130--Hb_012528_040 Hb_000858_050 Hb_000858_050 Hb_001001_130--Hb_000858_050 Hb_052139_010--Hb_001856_290 Hb_031194_020 Hb_031194_020 Hb_052139_010--Hb_031194_020 Hb_052139_010--Hb_000645_270 Hb_000000_090 Hb_000000_090 Hb_052139_010--Hb_000000_090 Hb_000645_270--Hb_031194_020 Hb_003622_050 Hb_003622_050 Hb_000645_270--Hb_003622_050 Hb_003947_020 Hb_003947_020 Hb_000645_270--Hb_003947_020 Hb_009095_020 Hb_009095_020 Hb_000645_270--Hb_009095_020 Hb_057716_010 Hb_057716_010 Hb_001856_290--Hb_057716_010 Hb_054865_040 Hb_054865_040 Hb_001856_290--Hb_054865_040 Hb_001856_290--Hb_031194_020 Hb_000336_130 Hb_000336_130 Hb_001999_330--Hb_000336_130 Hb_001999_330--Hb_002010_010 Hb_001999_330--Hb_000645_270 Hb_000844_060 Hb_000844_060 Hb_001999_330--Hb_000844_060 Hb_001999_330--Hb_009095_020 Hb_161881_010 Hb_161881_010 Hb_002010_010--Hb_161881_010 Hb_003732_030 Hb_003732_030 Hb_002010_010--Hb_003732_030 Hb_002010_010--Hb_000336_130 Hb_004030_010 Hb_004030_010 Hb_002010_010--Hb_004030_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.403787 2.30105 2.23604 0.0107321 0.00938176
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.839561 27.0883

CAGE analysis