Hb_054865_040

Information

Type -
Description -
Location Contig54865: 37290-37640
Sequence    

Annotation

kegg
ID pop:POPTR_0014s09900g
description POPTRDRAFT_664170; auxin-responsive family protein
nr
ID XP_012083129.1
description PREDICTED: auxin-induced protein 15A [Jatropha curcas]
swissprot
ID Q9ZUZ3
description Auxin-responsive protein SAUR32 OS=Arabidopsis thaliana GN=SAUR32 PE=2 SV=1
trembl
ID B9I925
description Auxin-responsive family protein OS=Populus trichocarpa GN=POPTR_0014s09900g PE=4 SV=1
Gene Ontology
ID GO:0009733
description auxin-responsive family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48076: 36594-36953
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_054865_040 0.0 - - PREDICTED: auxin-induced protein 15A [Jatropha curcas]
2 Hb_001856_290 0.0949859659 - - hypothetical protein JCGZ_16255 [Jatropha curcas]
3 Hb_015807_020 0.1026883203 - - gibberellin 20-oxidase, putative [Ricinus communis]
4 Hb_001146_030 0.1092315515 - - cytochrome P450, putative [Ricinus communis]
5 Hb_007101_090 0.109919376 - - PREDICTED: protein ALTERED XYLOGLUCAN 4 [Jatropha curcas]
6 Hb_001085_200 0.110606389 transcription factor TF Family: ARID PREDICTED: high mobility group B protein 15 [Jatropha curcas]
7 Hb_052139_010 0.1153260422 - - PREDICTED: glucan endo-1,3-beta-glucosidase, basic isoform-like [Populus euphratica]
8 Hb_000415_080 0.1158275844 - - -
9 Hb_040245_010 0.1158415867 - - hypothetical protein CISIN_1g039575mg, partial [Citrus sinensis]
10 Hb_068804_110 0.1171721962 - - PREDICTED: serine hydroxymethyltransferase, mitochondrial [Jatropha curcas]
11 Hb_004459_050 0.1197146635 - - conserved hypothetical protein [Ricinus communis]
12 Hb_003622_050 0.1207265067 - - PREDICTED: respiratory burst oxidase homolog protein A-like [Jatropha curcas]
13 Hb_000645_270 0.1212624163 - - PREDICTED: uncharacterized protein LOC105122837 isoform X2 [Populus euphratica]
14 Hb_003073_030 0.1213568972 - - conserved hypothetical protein [Ricinus communis]
15 Hb_031194_020 0.1229171262 - - BnaCnng13030D [Brassica napus]
16 Hb_077151_010 0.1230200256 - - ankyrin repeat protein [Bruguiera gymnorhiza]
17 Hb_001610_100 0.1235686661 - - Xylem serine proteinase 1 precursor, putative [Ricinus communis]
18 Hb_000000_090 0.1241071377 - - conserved hypothetical protein [Ricinus communis]
19 Hb_002188_150 0.1243736329 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000199_090 0.1250787175 - - Tetrapyrrole-binding family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_054865_040 Hb_054865_040 Hb_001856_290 Hb_001856_290 Hb_054865_040--Hb_001856_290 Hb_015807_020 Hb_015807_020 Hb_054865_040--Hb_015807_020 Hb_001146_030 Hb_001146_030 Hb_054865_040--Hb_001146_030 Hb_007101_090 Hb_007101_090 Hb_054865_040--Hb_007101_090 Hb_001085_200 Hb_001085_200 Hb_054865_040--Hb_001085_200 Hb_052139_010 Hb_052139_010 Hb_054865_040--Hb_052139_010 Hb_001856_290--Hb_052139_010 Hb_001856_290--Hb_007101_090 Hb_057716_010 Hb_057716_010 Hb_001856_290--Hb_057716_010 Hb_001001_130 Hb_001001_130 Hb_001856_290--Hb_001001_130 Hb_031194_020 Hb_031194_020 Hb_001856_290--Hb_031194_020 Hb_001579_050 Hb_001579_050 Hb_015807_020--Hb_001579_050 Hb_000858_050 Hb_000858_050 Hb_015807_020--Hb_000858_050 Hb_001289_050 Hb_001289_050 Hb_015807_020--Hb_001289_050 Hb_004459_050 Hb_004459_050 Hb_015807_020--Hb_004459_050 Hb_077151_010 Hb_077151_010 Hb_015807_020--Hb_077151_010 Hb_000282_100 Hb_000282_100 Hb_015807_020--Hb_000282_100 Hb_001295_080 Hb_001295_080 Hb_001146_030--Hb_001295_080 Hb_001146_030--Hb_001085_200 Hb_000844_060 Hb_000844_060 Hb_001146_030--Hb_000844_060 Hb_002188_150 Hb_002188_150 Hb_001146_030--Hb_002188_150 Hb_001053_050 Hb_001053_050 Hb_001146_030--Hb_001053_050 Hb_007101_090--Hb_001001_130 Hb_007101_090--Hb_052139_010 Hb_000645_270 Hb_000645_270 Hb_007101_090--Hb_000645_270 Hb_001999_330 Hb_001999_330 Hb_007101_090--Hb_001999_330 Hb_002010_010 Hb_002010_010 Hb_007101_090--Hb_002010_010 Hb_003253_030 Hb_003253_030 Hb_001085_200--Hb_003253_030 Hb_068804_110 Hb_068804_110 Hb_001085_200--Hb_068804_110 Hb_003622_050 Hb_003622_050 Hb_001085_200--Hb_003622_050 Hb_001085_200--Hb_002188_150 Hb_052139_010--Hb_031194_020 Hb_052139_010--Hb_001001_130 Hb_052139_010--Hb_000645_270 Hb_000000_090 Hb_000000_090 Hb_052139_010--Hb_000000_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.289388 1.72396 13.5144 18.1467 0 0.752148
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.408367 0.624119 7.68939 128.32

CAGE analysis