Hb_001085_200

Information

Type transcription factor
Description TF Family: ARID
Location Contig1085: 143547-148734
Sequence    

Annotation

kegg
ID rcu:RCOM_1019520
description transcription factor, putative
nr
ID XP_012071138.1
description PREDICTED: high mobility group B protein 15 [Jatropha curcas]
swissprot
ID Q9MAT6
description High mobility group B protein 15 OS=Arabidopsis thaliana GN=HMGB15 PE=2 SV=1
trembl
ID A0A067KTA1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01124 PE=4 SV=1
Gene Ontology
ID GO:0005634
description high mobility group b protein 15 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02583: 144311-144557 , PASA_asmbl_02584: 145195-145372
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001085_200 0.0 transcription factor TF Family: ARID PREDICTED: high mobility group B protein 15 [Jatropha curcas]
2 Hb_003253_030 0.0940010839 - - lysosomal pro-X carboxypeptidase, putative [Ricinus communis]
3 Hb_068804_110 0.094626061 - - PREDICTED: serine hydroxymethyltransferase, mitochondrial [Jatropha curcas]
4 Hb_001146_030 0.1033840375 - - cytochrome P450, putative [Ricinus communis]
5 Hb_003622_050 0.1046106489 - - PREDICTED: respiratory burst oxidase homolog protein A-like [Jatropha curcas]
6 Hb_002188_150 0.110026144 - - conserved hypothetical protein [Ricinus communis]
7 Hb_054865_040 0.110606389 - - PREDICTED: auxin-induced protein 15A [Jatropha curcas]
8 Hb_000844_060 0.110781609 - - PREDICTED: uncharacterized protein LOC105633706 [Jatropha curcas]
9 Hb_001610_100 0.1129665124 - - Xylem serine proteinase 1 precursor, putative [Ricinus communis]
10 Hb_000768_080 0.1140117899 - - Mlo protein [Hevea brasiliensis]
11 Hb_001053_050 0.1140476225 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Vitis vinifera]
12 Hb_001080_290 0.1176455023 - - PSI reaction center subunit II [Citrus sinensis]
13 Hb_002600_110 0.1232020493 - - hypothetical protein POPTR_0004s10540g [Populus trichocarpa]
14 Hb_169492_010 0.1235905588 - - PREDICTED: expansin-like B1 [Jatropha curcas]
15 Hb_001775_010 0.1282521077 - - conserved hypothetical protein [Ricinus communis]
16 Hb_010021_040 0.1291564011 - - PREDICTED: uncharacterized protein LOC105630811 [Jatropha curcas]
17 Hb_000645_270 0.1302385429 - - PREDICTED: uncharacterized protein LOC105122837 isoform X2 [Populus euphratica]
18 Hb_001295_080 0.1306655243 - - Protein KES1, putative [Ricinus communis]
19 Hb_012049_010 0.1311832517 - - hypothetical protein B456_002G055100 [Gossypium raimondii]
20 Hb_000101_340 0.1315027519 - - 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [Ricinus communis]

Gene co-expression network

sample Hb_001085_200 Hb_001085_200 Hb_003253_030 Hb_003253_030 Hb_001085_200--Hb_003253_030 Hb_068804_110 Hb_068804_110 Hb_001085_200--Hb_068804_110 Hb_001146_030 Hb_001146_030 Hb_001085_200--Hb_001146_030 Hb_003622_050 Hb_003622_050 Hb_001085_200--Hb_003622_050 Hb_002188_150 Hb_002188_150 Hb_001085_200--Hb_002188_150 Hb_054865_040 Hb_054865_040 Hb_001085_200--Hb_054865_040 Hb_000844_060 Hb_000844_060 Hb_003253_030--Hb_000844_060 Hb_004329_030 Hb_004329_030 Hb_003253_030--Hb_004329_030 Hb_003253_030--Hb_003622_050 Hb_002081_140 Hb_002081_140 Hb_003253_030--Hb_002081_140 Hb_002600_110 Hb_002600_110 Hb_003253_030--Hb_002600_110 Hb_007595_020 Hb_007595_020 Hb_068804_110--Hb_007595_020 Hb_012940_020 Hb_012940_020 Hb_068804_110--Hb_012940_020 Hb_156850_020 Hb_156850_020 Hb_068804_110--Hb_156850_020 Hb_001610_100 Hb_001610_100 Hb_068804_110--Hb_001610_100 Hb_028960_010 Hb_028960_010 Hb_068804_110--Hb_028960_010 Hb_001295_080 Hb_001295_080 Hb_001146_030--Hb_001295_080 Hb_001146_030--Hb_000844_060 Hb_001146_030--Hb_002188_150 Hb_001053_050 Hb_001053_050 Hb_001146_030--Hb_001053_050 Hb_001146_030--Hb_054865_040 Hb_000645_270 Hb_000645_270 Hb_003622_050--Hb_000645_270 Hb_031194_020 Hb_031194_020 Hb_003622_050--Hb_031194_020 Hb_003622_050--Hb_000844_060 Hb_001080_290 Hb_001080_290 Hb_003622_050--Hb_001080_290 Hb_003622_050--Hb_002600_110 Hb_003622_050--Hb_002188_150 Hb_169492_010 Hb_169492_010 Hb_002188_150--Hb_169492_010 Hb_002188_150--Hb_001053_050 Hb_001775_010 Hb_001775_010 Hb_002188_150--Hb_001775_010 Hb_077976_010 Hb_077976_010 Hb_002188_150--Hb_077976_010 Hb_001856_290 Hb_001856_290 Hb_054865_040--Hb_001856_290 Hb_015807_020 Hb_015807_020 Hb_054865_040--Hb_015807_020 Hb_007101_090 Hb_007101_090 Hb_054865_040--Hb_007101_090 Hb_052139_010 Hb_052139_010 Hb_054865_040--Hb_052139_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.135047 0.322009 1.44464 3.55099 0.041259 0.159445
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0484127 0.133321 0.0360532 0.371517 20.3679

CAGE analysis