Hb_001610_100

Information

Type -
Description -
Location Contig1610: 95983-105234
Sequence    

Annotation

kegg
ID rcu:RCOM_1682240
description Xylem serine proteinase 1 precursor, putative (EC:1.3.1.74)
nr
ID XP_002509661.1
description Xylem serine proteinase 1 precursor, putative [Ricinus communis]
swissprot
ID O64495
description Subtilisin-like protease SBT1.2 OS=Arabidopsis thaliana GN=SBT1.2 PE=2 SV=1
trembl
ID B9RBX7
description Xylem serine proteinase 1, putative OS=Ricinus communis GN=RCOM_1682240 PE=4 SV=1
Gene Ontology
ID GO:0004252
description xylem serine proteinase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001610_100 0.0 - - Xylem serine proteinase 1 precursor, putative [Ricinus communis]
2 Hb_000832_050 0.0852211415 - - ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Marila laxiflora]
3 Hb_007101_090 0.0864306218 - - PREDICTED: protein ALTERED XYLOGLUCAN 4 [Jatropha curcas]
4 Hb_003947_020 0.0938169504 - - Serine/threonine-protein kinase-transforming protein raf, putative [Ricinus communis]
5 Hb_068804_110 0.0944636333 - - PREDICTED: serine hydroxymethyltransferase, mitochondrial [Jatropha curcas]
6 Hb_003732_030 0.0974108008 - - gibberellin 20-oxidase, putative [Ricinus communis]
7 Hb_001001_130 0.101197301 - - hypothetical protein POPTR_0002s12860g [Populus trichocarpa]
8 Hb_002010_010 0.1042901237 - - anthocyanidin 3-O-glucosyltransferase [Hevea brasiliensis]
9 Hb_000336_130 0.1043793079 - - Triacylglycerol lipase 2 precursor, putative [Ricinus communis]
10 Hb_001053_050 0.1060962655 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Vitis vinifera]
11 Hb_004855_030 0.1062492564 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
12 Hb_000645_270 0.1087366892 - - PREDICTED: uncharacterized protein LOC105122837 isoform X2 [Populus euphratica]
13 Hb_001951_040 0.1088583525 - - PREDICTED: probable starch synthase 4, chloroplastic/amyloplastic isoform X1 [Jatropha curcas]
14 Hb_001775_010 0.110051815 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001146_030 0.1110004243 - - cytochrome P450, putative [Ricinus communis]
16 Hb_001135_190 0.1128144321 transcription factor TF Family: Orphans Pseudo response regulator isoform 11 [Theobroma cacao]
17 Hb_001085_200 0.1129665124 transcription factor TF Family: ARID PREDICTED: high mobility group B protein 15 [Jatropha curcas]
18 Hb_000349_150 0.1138224159 - - PREDICTED: geraniol 8-hydroxylase-like [Jatropha curcas]
19 Hb_063885_010 0.1140197848 - - Xylem serine proteinase 1 precursor, putative [Ricinus communis]
20 Hb_003622_050 0.1159087311 - - PREDICTED: respiratory burst oxidase homolog protein A-like [Jatropha curcas]

Gene co-expression network

sample Hb_001610_100 Hb_001610_100 Hb_000832_050 Hb_000832_050 Hb_001610_100--Hb_000832_050 Hb_007101_090 Hb_007101_090 Hb_001610_100--Hb_007101_090 Hb_003947_020 Hb_003947_020 Hb_001610_100--Hb_003947_020 Hb_068804_110 Hb_068804_110 Hb_001610_100--Hb_068804_110 Hb_003732_030 Hb_003732_030 Hb_001610_100--Hb_003732_030 Hb_001001_130 Hb_001001_130 Hb_001610_100--Hb_001001_130 Hb_004855_030 Hb_004855_030 Hb_000832_050--Hb_004855_030 Hb_000349_150 Hb_000349_150 Hb_000832_050--Hb_000349_150 Hb_000893_040 Hb_000893_040 Hb_000832_050--Hb_000893_040 Hb_008489_030 Hb_008489_030 Hb_000832_050--Hb_008489_030 Hb_000977_260 Hb_000977_260 Hb_000832_050--Hb_000977_260 Hb_003251_010 Hb_003251_010 Hb_000832_050--Hb_003251_010 Hb_007101_090--Hb_001001_130 Hb_052139_010 Hb_052139_010 Hb_007101_090--Hb_052139_010 Hb_000645_270 Hb_000645_270 Hb_007101_090--Hb_000645_270 Hb_001856_290 Hb_001856_290 Hb_007101_090--Hb_001856_290 Hb_001999_330 Hb_001999_330 Hb_007101_090--Hb_001999_330 Hb_002010_010 Hb_002010_010 Hb_007101_090--Hb_002010_010 Hb_183479_030 Hb_183479_030 Hb_003947_020--Hb_183479_030 Hb_003947_020--Hb_000645_270 Hb_002997_060 Hb_002997_060 Hb_003947_020--Hb_002997_060 Hb_000696_200 Hb_000696_200 Hb_003947_020--Hb_000696_200 Hb_005171_020 Hb_005171_020 Hb_003947_020--Hb_005171_020 Hb_043327_010 Hb_043327_010 Hb_003947_020--Hb_043327_010 Hb_007595_020 Hb_007595_020 Hb_068804_110--Hb_007595_020 Hb_012940_020 Hb_012940_020 Hb_068804_110--Hb_012940_020 Hb_156850_020 Hb_156850_020 Hb_068804_110--Hb_156850_020 Hb_001085_200 Hb_001085_200 Hb_068804_110--Hb_001085_200 Hb_028960_010 Hb_028960_010 Hb_068804_110--Hb_028960_010 Hb_003732_030--Hb_002010_010 Hb_004030_010 Hb_004030_010 Hb_003732_030--Hb_004030_010 Hb_011689_070 Hb_011689_070 Hb_003732_030--Hb_011689_070 Hb_000776_120 Hb_000776_120 Hb_003732_030--Hb_000776_120 Hb_001775_010 Hb_001775_010 Hb_003732_030--Hb_001775_010 Hb_000922_110 Hb_000922_110 Hb_003732_030--Hb_000922_110 Hb_001001_130--Hb_052139_010 Hb_001001_130--Hb_001856_290 Hb_000135_080 Hb_000135_080 Hb_001001_130--Hb_000135_080 Hb_012528_040 Hb_012528_040 Hb_001001_130--Hb_012528_040 Hb_000858_050 Hb_000858_050 Hb_001001_130--Hb_000858_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0568239 0.136872 1.01463 0.896995 0.0153046 0.0791662
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0141113 0 0.14571 10.8549

CAGE analysis