Hb_003947_020

Information

Type -
Description -
Location Contig3947: 22710-26637
Sequence    

Annotation

kegg
ID rcu:RCOM_1487300
description Serine/threonine-protein kinase-transforming protein raf, putative (EC:2.7.10.2)
nr
ID XP_002515931.1
description Serine/threonine-protein kinase-transforming protein raf, putative [Ricinus communis]
swissprot
ID O64483
description Senescence-induced receptor-like serine/threonine-protein kinase OS=Arabidopsis thaliana GN=SIRK PE=2 SV=1
trembl
ID B9RQB2
description Serine/threonine-protein kinase-transforming protein raf, putative OS=Ricinus communis GN=RCOM_1487300 PE=4 SV=1
Gene Ontology
ID GO:0004674
description leucine-rich repeat receptor-like protein kinase at2g19210 isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003947_020 0.0 - - Serine/threonine-protein kinase-transforming protein raf, putative [Ricinus communis]
2 Hb_183479_030 0.0726118658 - - Photosystem I reaction center subunit V, chloroplast precursor, putative [Ricinus communis]
3 Hb_000645_270 0.0761262397 - - PREDICTED: uncharacterized protein LOC105122837 isoform X2 [Populus euphratica]
4 Hb_002997_060 0.0777694341 - - hypothetical protein POPTR_0011s10730g [Populus trichocarpa]
5 Hb_000696_200 0.0796314079 - - PREDICTED: GDSL esterase/lipase EXL3-like [Jatropha curcas]
6 Hb_005171_020 0.0798417335 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF5.7 [Jatropha curcas]
7 Hb_043327_010 0.0807024889 - - PREDICTED: uncharacterized protein LOC105785093, partial [Gossypium raimondii]
8 Hb_003732_030 0.081305802 - - gibberellin 20-oxidase, putative [Ricinus communis]
9 Hb_003228_060 0.0818014876 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001715_050 0.0822726118 - - PREDICTED: probable 2-oxoglutarate-dependent dioxygenase AOP1 [Jatropha curcas]
11 Hb_006272_010 0.0825045783 - - PREDICTED: cytochrome P450 86B1 [Vitis vinifera]
12 Hb_009095_020 0.0837515696 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1, partial [Populus euphratica]
13 Hb_004855_030 0.0841766582 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
14 Hb_083242_040 0.0850683614 - - -
15 Hb_063885_010 0.0871966836 - - Xylem serine proteinase 1 precursor, putative [Ricinus communis]
16 Hb_034168_060 0.089560305 - - ribulose-1-5-bisphosphate carboxylase/oxygenase large subunit, partial (chloroplast) [Cucumis argenteus]
17 Hb_002010_010 0.0897767251 - - anthocyanidin 3-O-glucosyltransferase [Hevea brasiliensis]
18 Hb_000832_050 0.0903168942 - - ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Marila laxiflora]
19 Hb_003952_030 0.0906693426 - - hypothetical protein JCGZ_16620 [Jatropha curcas]
20 Hb_008489_030 0.0928267252 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]

Gene co-expression network

sample Hb_003947_020 Hb_003947_020 Hb_183479_030 Hb_183479_030 Hb_003947_020--Hb_183479_030 Hb_000645_270 Hb_000645_270 Hb_003947_020--Hb_000645_270 Hb_002997_060 Hb_002997_060 Hb_003947_020--Hb_002997_060 Hb_000696_200 Hb_000696_200 Hb_003947_020--Hb_000696_200 Hb_005171_020 Hb_005171_020 Hb_003947_020--Hb_005171_020 Hb_043327_010 Hb_043327_010 Hb_003947_020--Hb_043327_010 Hb_006272_010 Hb_006272_010 Hb_183479_030--Hb_006272_010 Hb_183479_030--Hb_005171_020 Hb_183479_030--Hb_043327_010 Hb_003952_030 Hb_003952_030 Hb_183479_030--Hb_003952_030 Hb_002600_110 Hb_002600_110 Hb_183479_030--Hb_002600_110 Hb_001715_050 Hb_001715_050 Hb_183479_030--Hb_001715_050 Hb_031194_020 Hb_031194_020 Hb_000645_270--Hb_031194_020 Hb_003622_050 Hb_003622_050 Hb_000645_270--Hb_003622_050 Hb_007101_090 Hb_007101_090 Hb_000645_270--Hb_007101_090 Hb_052139_010 Hb_052139_010 Hb_000645_270--Hb_052139_010 Hb_009095_020 Hb_009095_020 Hb_000645_270--Hb_009095_020 Hb_008489_030 Hb_008489_030 Hb_002997_060--Hb_008489_030 Hb_002997_060--Hb_000696_200 Hb_002997_060--Hb_043327_010 Hb_002997_060--Hb_005171_020 Hb_003228_060 Hb_003228_060 Hb_002997_060--Hb_003228_060 Hb_000893_040 Hb_000893_040 Hb_002997_060--Hb_000893_040 Hb_000696_200--Hb_003228_060 Hb_083242_040 Hb_083242_040 Hb_000696_200--Hb_083242_040 Hb_000696_200--Hb_001715_050 Hb_034168_060 Hb_034168_060 Hb_000696_200--Hb_034168_060 Hb_000696_200--Hb_006272_010 Hb_005171_020--Hb_043327_010 Hb_005171_020--Hb_006272_010 Hb_005171_020--Hb_001715_050 Hb_005171_020--Hb_083242_040 Hb_005171_020--Hb_003228_060 Hb_043327_010--Hb_006272_010 Hb_043327_010--Hb_001715_050 Hb_000504_220 Hb_000504_220 Hb_043327_010--Hb_000504_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0220006 0.355993 0.398054 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.013231 0 0.0315143 5.06745

CAGE analysis