Hb_183479_030

Information

Type -
Description -
Location Contig183479: 13115-13564
Sequence    

Annotation

kegg
ID rcu:RCOM_0302140
description Photosystem I reaction center subunit V, chloroplast precursor, putative
nr
ID XP_002531767.1
description Photosystem I reaction center subunit V, chloroplast precursor, putative [Ricinus communis]
swissprot
ID Q9S7N7
description Photosystem I reaction center subunit V, chloroplastic OS=Arabidopsis thaliana GN=PSAG PE=2 SV=1
trembl
ID B9T0J8
description Photosystem I reaction center subunit V, chloroplast, putative OS=Ricinus communis GN=RCOM_0302140 PE=4 SV=1
Gene Ontology
ID GO:0009507
description photosystem i reaction center subunit chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17931: 12908-13631
cDNA
(Sanger)
(ID:Location)		 001_M17.ab1: 12943-13626 , 005_E12.ab1: 12967-13626 , 007_F14.ab1: 12943-13627 , 009_E16.ab1: 13001-13632 , 015_P05.ab1: 12908-13614 , 023_M18.ab1: 12926-13614 , 028_J13.ab1: 12912-13631 , 037_A24.ab1: 12911-13623 , 039_O11.ab1: 12999-13610 , 041_P24.ab1: 13000-13626 , 048_D17.ab1: 12912-13631

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_183479_030 0.0 - - Photosystem I reaction center subunit V, chloroplast precursor, putative [Ricinus communis]
2 Hb_006272_010 0.0488602402 - - PREDICTED: cytochrome P450 86B1 [Vitis vinifera]
3 Hb_005171_020 0.0490772951 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF5.7 [Jatropha curcas]
4 Hb_043327_010 0.051421021 - - PREDICTED: uncharacterized protein LOC105785093, partial [Gossypium raimondii]
5 Hb_003952_030 0.0544306334 - - hypothetical protein JCGZ_16620 [Jatropha curcas]
6 Hb_002600_110 0.0603780173 - - hypothetical protein POPTR_0004s10540g [Populus trichocarpa]
7 Hb_001715_050 0.0648806292 - - PREDICTED: probable 2-oxoglutarate-dependent dioxygenase AOP1 [Jatropha curcas]
8 Hb_048694_010 0.0679645429 - - catalytic, putative [Ricinus communis]
9 Hb_000504_220 0.0697755179 - - hypothetical protein JCGZ_10249 [Jatropha curcas]
10 Hb_001080_290 0.0707834309 - - PSI reaction center subunit II [Citrus sinensis]
11 Hb_003947_020 0.0726118658 - - Serine/threonine-protein kinase-transforming protein raf, putative [Ricinus communis]
12 Hb_083242_040 0.0733704888 - - -
13 Hb_000940_120 0.0736371848 - - PREDICTED: proline-rich protein 4-like isoform X2 [Pyrus x bretschneideri]
14 Hb_003228_060 0.080414934 - - conserved hypothetical protein [Ricinus communis]
15 Hb_002997_060 0.0810811181 - - hypothetical protein POPTR_0011s10730g [Populus trichocarpa]
16 Hb_009095_020 0.0820973585 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1, partial [Populus euphratica]
17 Hb_003622_050 0.0824468196 - - PREDICTED: respiratory burst oxidase homolog protein A-like [Jatropha curcas]
18 Hb_001775_010 0.0844491813 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001140_110 0.0852493257 - - hypothetical protein JCGZ_26123 [Jatropha curcas]
20 Hb_000696_200 0.0879926485 - - PREDICTED: GDSL esterase/lipase EXL3-like [Jatropha curcas]

Gene co-expression network

sample Hb_183479_030 Hb_183479_030 Hb_006272_010 Hb_006272_010 Hb_183479_030--Hb_006272_010 Hb_005171_020 Hb_005171_020 Hb_183479_030--Hb_005171_020 Hb_043327_010 Hb_043327_010 Hb_183479_030--Hb_043327_010 Hb_003952_030 Hb_003952_030 Hb_183479_030--Hb_003952_030 Hb_002600_110 Hb_002600_110 Hb_183479_030--Hb_002600_110 Hb_001715_050 Hb_001715_050 Hb_183479_030--Hb_001715_050 Hb_006272_010--Hb_005171_020 Hb_006272_010--Hb_001715_050 Hb_006272_010--Hb_043327_010 Hb_083242_040 Hb_083242_040 Hb_006272_010--Hb_083242_040 Hb_003228_060 Hb_003228_060 Hb_006272_010--Hb_003228_060 Hb_005171_020--Hb_043327_010 Hb_005171_020--Hb_001715_050 Hb_002997_060 Hb_002997_060 Hb_005171_020--Hb_002997_060 Hb_005171_020--Hb_083242_040 Hb_005171_020--Hb_003228_060 Hb_043327_010--Hb_002997_060 Hb_043327_010--Hb_001715_050 Hb_000504_220 Hb_000504_220 Hb_043327_010--Hb_000504_220 Hb_048694_010 Hb_048694_010 Hb_003952_030--Hb_048694_010 Hb_003952_030--Hb_006272_010 Hb_003952_030--Hb_002600_110 Hb_003952_030--Hb_005171_020 Hb_003952_030--Hb_001715_050 Hb_000768_080 Hb_000768_080 Hb_002600_110--Hb_000768_080 Hb_002600_110--Hb_048694_010 Hb_001775_010 Hb_001775_010 Hb_002600_110--Hb_001775_010 Hb_001080_290 Hb_001080_290 Hb_002600_110--Hb_001080_290 Hb_002445_020 Hb_002445_020 Hb_002600_110--Hb_002445_020 Hb_001715_050--Hb_083242_040 Hb_001715_050--Hb_003228_060 Hb_000696_200 Hb_000696_200 Hb_001715_050--Hb_000696_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 5.64867 227.791 453.95 0 0.15238
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.963095 1.3869 0 5.1433 3686

CAGE analysis