Hb_001715_050

Information

Type -
Description -
Location Contig1715: 89518-105450
Sequence    

Annotation

kegg
ID rcu:RCOM_0896170
description Gibberellin 20 oxidase, putative (EC:1.14.11.15)
nr
ID XP_012073282.1
description PREDICTED: probable 2-oxoglutarate-dependent dioxygenase AOP1 [Jatropha curcas]
swissprot
ID Q945B6
description Probable 2-oxoglutarate-dependent dioxygenase AOP1.2 OS=Arabidopsis thaliana GN=AOP1.2 PE=2 SV=1
trembl
ID A0A067KQB0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06224 PE=3 SV=1
Gene Ontology
ID GO:0005506
description probable 2-oxoglutarate-dependent dioxygenase aop1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001715_050 0.0 - - PREDICTED: probable 2-oxoglutarate-dependent dioxygenase AOP1 [Jatropha curcas]
2 Hb_083242_040 0.0107944501 - - -
3 Hb_003228_060 0.021267561 - - conserved hypothetical protein [Ricinus communis]
4 Hb_006272_010 0.0227510907 - - PREDICTED: cytochrome P450 86B1 [Vitis vinifera]
5 Hb_000696_200 0.036263891 - - PREDICTED: GDSL esterase/lipase EXL3-like [Jatropha curcas]
6 Hb_005171_020 0.0364622956 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF5.7 [Jatropha curcas]
7 Hb_043327_010 0.0458298281 - - PREDICTED: uncharacterized protein LOC105785093, partial [Gossypium raimondii]
8 Hb_002997_060 0.0503810175 - - hypothetical protein POPTR_0011s10730g [Populus trichocarpa]
9 Hb_034168_060 0.0569721178 - - ribulose-1-5-bisphosphate carboxylase/oxygenase large subunit, partial (chloroplast) [Cucumis argenteus]
10 Hb_006331_010 0.0577314334 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1, partial [Populus euphratica]
11 Hb_183479_030 0.0648806292 - - Photosystem I reaction center subunit V, chloroplast precursor, putative [Ricinus communis]
12 Hb_048694_010 0.0702923131 - - catalytic, putative [Ricinus communis]
13 Hb_009095_020 0.0769863139 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1, partial [Populus euphratica]
14 Hb_001081_070 0.0784101488 - - hypothetical protein POPTR_0001s08730g [Populus trichocarpa]
15 Hb_003947_020 0.0822726118 - - Serine/threonine-protein kinase-transforming protein raf, putative [Ricinus communis]
16 Hb_008489_030 0.0835644744 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
17 Hb_003952_030 0.0847939831 - - hypothetical protein JCGZ_16620 [Jatropha curcas]
18 Hb_004138_020 0.085415297 - - PREDICTED: cucumisin-like [Populus euphratica]
19 Hb_007594_020 0.0913920266 - - hypothetical protein JCGZ_18350 [Jatropha curcas]
20 Hb_015981_010 0.0938233645 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]

Gene co-expression network

sample Hb_001715_050 Hb_001715_050 Hb_083242_040 Hb_083242_040 Hb_001715_050--Hb_083242_040 Hb_003228_060 Hb_003228_060 Hb_001715_050--Hb_003228_060 Hb_006272_010 Hb_006272_010 Hb_001715_050--Hb_006272_010 Hb_000696_200 Hb_000696_200 Hb_001715_050--Hb_000696_200 Hb_005171_020 Hb_005171_020 Hb_001715_050--Hb_005171_020 Hb_043327_010 Hb_043327_010 Hb_001715_050--Hb_043327_010 Hb_083242_040--Hb_003228_060 Hb_083242_040--Hb_000696_200 Hb_083242_040--Hb_006272_010 Hb_083242_040--Hb_005171_020 Hb_034168_060 Hb_034168_060 Hb_083242_040--Hb_034168_060 Hb_003228_060--Hb_000696_200 Hb_003228_060--Hb_006272_010 Hb_002997_060 Hb_002997_060 Hb_003228_060--Hb_002997_060 Hb_003228_060--Hb_034168_060 Hb_006272_010--Hb_005171_020 Hb_006272_010--Hb_043327_010 Hb_183479_030 Hb_183479_030 Hb_006272_010--Hb_183479_030 Hb_000696_200--Hb_002997_060 Hb_000696_200--Hb_034168_060 Hb_000696_200--Hb_006272_010 Hb_005171_020--Hb_043327_010 Hb_005171_020--Hb_002997_060 Hb_005171_020--Hb_003228_060 Hb_043327_010--Hb_002997_060 Hb_000504_220 Hb_000504_220 Hb_043327_010--Hb_000504_220 Hb_043327_010--Hb_183479_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0366692 0.0599572 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.736669

CAGE analysis