Hb_009095_020

Information

Type -
Description -
Location Contig9095: 6992-10319
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa001615mg
description hypothetical protein
nr
ID XP_011015680.1
description PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1, partial [Populus euphratica]
swissprot
ID Q9ZT07
description G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 OS=Arabidopsis thaliana GN=RKS1 PE=3 SV=3
trembl
ID F6I1Y8
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0374g00030 PE=3 SV=1
Gene Ontology
ID GO:0005515
description g-type lectin s-receptor-like serine threonine-protein kinase at1g11410

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62107: 3829-10628
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009095_020 0.0 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1, partial [Populus euphratica]
2 Hb_006331_010 0.0626053436 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1, partial [Populus euphratica]
3 Hb_048694_010 0.074325316 - - catalytic, putative [Ricinus communis]
4 Hb_001081_070 0.0751567482 - - hypothetical protein POPTR_0001s08730g [Populus trichocarpa]
5 Hb_083242_040 0.0754272891 - - -
6 Hb_026188_010 0.076656254 - - PREDICTED: tropinone reductase homolog [Jatropha curcas]
7 Hb_001715_050 0.0769863139 - - PREDICTED: probable 2-oxoglutarate-dependent dioxygenase AOP1 [Jatropha curcas]
8 Hb_034168_060 0.0802026818 - - ribulose-1-5-bisphosphate carboxylase/oxygenase large subunit, partial (chloroplast) [Cucumis argenteus]
9 Hb_183479_030 0.0820973585 - - Photosystem I reaction center subunit V, chloroplast precursor, putative [Ricinus communis]
10 Hb_006272_010 0.0826447144 - - PREDICTED: cytochrome P450 86B1 [Vitis vinifera]
11 Hb_000645_270 0.0833595274 - - PREDICTED: uncharacterized protein LOC105122837 isoform X2 [Populus euphratica]
12 Hb_003947_020 0.0837515696 - - Serine/threonine-protein kinase-transforming protein raf, putative [Ricinus communis]
13 Hb_003228_060 0.084925841 - - conserved hypothetical protein [Ricinus communis]
14 Hb_004138_020 0.087437444 - - PREDICTED: cucumisin-like [Populus euphratica]
15 Hb_086691_010 0.0881204544 - - PREDICTED: terpene synthase 10-like [Jatropha curcas]
16 Hb_003952_030 0.0904078553 - - hypothetical protein JCGZ_16620 [Jatropha curcas]
17 Hb_000696_200 0.0924963314 - - PREDICTED: GDSL esterase/lipase EXL3-like [Jatropha curcas]
18 Hb_063885_010 0.0946457925 - - Xylem serine proteinase 1 precursor, putative [Ricinus communis]
19 Hb_001999_330 0.0950476825 - - hypothetical protein PRUPE_ppa022262mg, partial [Prunus persica]
20 Hb_005171_020 0.0954713132 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF5.7 [Jatropha curcas]

Gene co-expression network

sample Hb_009095_020 Hb_009095_020 Hb_006331_010 Hb_006331_010 Hb_009095_020--Hb_006331_010 Hb_048694_010 Hb_048694_010 Hb_009095_020--Hb_048694_010 Hb_001081_070 Hb_001081_070 Hb_009095_020--Hb_001081_070 Hb_083242_040 Hb_083242_040 Hb_009095_020--Hb_083242_040 Hb_026188_010 Hb_026188_010 Hb_009095_020--Hb_026188_010 Hb_001715_050 Hb_001715_050 Hb_009095_020--Hb_001715_050 Hb_006331_010--Hb_048694_010 Hb_006331_010--Hb_001081_070 Hb_006331_010--Hb_083242_040 Hb_004138_020 Hb_004138_020 Hb_006331_010--Hb_004138_020 Hb_006331_010--Hb_001715_050 Hb_002600_110 Hb_002600_110 Hb_048694_010--Hb_002600_110 Hb_183479_030 Hb_183479_030 Hb_048694_010--Hb_183479_030 Hb_006272_010 Hb_006272_010 Hb_048694_010--Hb_006272_010 Hb_048694_010--Hb_001715_050 Hb_048694_010--Hb_083242_040 Hb_001081_070--Hb_004138_020 Hb_002294_020 Hb_002294_020 Hb_001081_070--Hb_002294_020 Hb_001081_070--Hb_083242_040 Hb_003477_020 Hb_003477_020 Hb_001081_070--Hb_003477_020 Hb_083242_040--Hb_001715_050 Hb_003228_060 Hb_003228_060 Hb_083242_040--Hb_003228_060 Hb_000696_200 Hb_000696_200 Hb_083242_040--Hb_000696_200 Hb_083242_040--Hb_006272_010 Hb_005171_020 Hb_005171_020 Hb_083242_040--Hb_005171_020 Hb_034168_060 Hb_034168_060 Hb_083242_040--Hb_034168_060 Hb_000336_130 Hb_000336_130 Hb_026188_010--Hb_000336_130 Hb_000645_270 Hb_000645_270 Hb_026188_010--Hb_000645_270 Hb_063885_010 Hb_063885_010 Hb_026188_010--Hb_063885_010 Hb_026188_010--Hb_034168_060 Hb_001999_330 Hb_001999_330 Hb_026188_010--Hb_001999_330 Hb_001715_050--Hb_003228_060 Hb_001715_050--Hb_006272_010 Hb_001715_050--Hb_000696_200 Hb_001715_050--Hb_005171_020 Hb_043327_010 Hb_043327_010 Hb_001715_050--Hb_043327_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0084112 0.162479 0.483401 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0435074 5.46464

CAGE analysis