Hb_004138_020

Information

Type -
Description -
Location Contig4138: 15023-31194
Sequence    

Annotation

kegg
ID pop:POPTR_0010s20400g
description POPTRDRAFT_227262; cucumisin family protein
nr
ID XP_011036040.1
description PREDICTED: cucumisin-like [Populus euphratica]
swissprot
ID Q39547
description Cucumisin OS=Cucumis melo PE=1 SV=1
trembl
ID B9HT42
description Cucumisin family protein OS=Populus trichocarpa GN=POPTR_0010s20400g PE=4 SV=2
Gene Ontology
ID GO:0004252
description subtilisin-like serine endopeptidase family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004138_020 0.0 - - PREDICTED: cucumisin-like [Populus euphratica]
2 Hb_003477_020 0.0346511552 desease resistance Gene Name: AAA_29 PREDICTED: ABC transporter G family member 15-like [Populus euphratica]
3 Hb_007645_040 0.0468957723 - - ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Tachigali myrmecophila]
4 Hb_001081_070 0.0506952423 - - hypothetical protein POPTR_0001s08730g [Populus trichocarpa]
5 Hb_006331_010 0.0557913628 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1, partial [Populus euphratica]
6 Hb_034168_060 0.0758352386 - - ribulose-1-5-bisphosphate carboxylase/oxygenase large subunit, partial (chloroplast) [Cucumis argenteus]
7 Hb_083242_040 0.0763595085 - - -
8 Hb_005087_020 0.0819201942 - - Metalloendoproteinase 1 precursor, putative [Ricinus communis]
9 Hb_001338_010 0.0835857224 transcription factor TF Family: GNAT GCN5-related N-acetyltransferase family protein [Populus trichocarpa]
10 Hb_000031_070 0.0837884738 - - Thioredoxin domain-containing protein, putative [Ricinus communis]
11 Hb_001779_050 0.0843398601 - - polyprotein [Ananas comosus]
12 Hb_176140_010 0.0844683263 - - polyprotein [Oryza australiensis]
13 Hb_003228_060 0.0847332964 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001715_050 0.085415297 - - PREDICTED: probable 2-oxoglutarate-dependent dioxygenase AOP1 [Jatropha curcas]
15 Hb_000388_020 0.0861381239 - - PREDICTED: MLP-like protein 43 [Fragaria vesca subsp. vesca]
16 Hb_009095_020 0.087437444 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1, partial [Populus euphratica]
17 Hb_158575_010 0.0912339276 - - conserved hypothetical protein [Ricinus communis]
18 Hb_157680_010 0.0914742004 - - PREDICTED: uncharacterized protein LOC103444007 [Malus domestica]
19 Hb_004453_120 0.0926693879 - - ammonium transporter, putative [Ricinus communis]
20 Hb_000696_200 0.0935131824 - - PREDICTED: GDSL esterase/lipase EXL3-like [Jatropha curcas]

Gene co-expression network

sample Hb_004138_020 Hb_004138_020 Hb_003477_020 Hb_003477_020 Hb_004138_020--Hb_003477_020 Hb_007645_040 Hb_007645_040 Hb_004138_020--Hb_007645_040 Hb_001081_070 Hb_001081_070 Hb_004138_020--Hb_001081_070 Hb_006331_010 Hb_006331_010 Hb_004138_020--Hb_006331_010 Hb_034168_060 Hb_034168_060 Hb_004138_020--Hb_034168_060 Hb_083242_040 Hb_083242_040 Hb_004138_020--Hb_083242_040 Hb_003477_020--Hb_007645_040 Hb_005087_020 Hb_005087_020 Hb_003477_020--Hb_005087_020 Hb_000031_070 Hb_000031_070 Hb_003477_020--Hb_000031_070 Hb_001338_010 Hb_001338_010 Hb_003477_020--Hb_001338_010 Hb_001779_050 Hb_001779_050 Hb_003477_020--Hb_001779_050 Hb_000388_020 Hb_000388_020 Hb_007645_040--Hb_000388_020 Hb_007645_040--Hb_034168_060 Hb_003407_050 Hb_003407_050 Hb_007645_040--Hb_003407_050 Hb_054839_010 Hb_054839_010 Hb_007645_040--Hb_054839_010 Hb_001081_070--Hb_006331_010 Hb_002294_020 Hb_002294_020 Hb_001081_070--Hb_002294_020 Hb_001081_070--Hb_083242_040 Hb_001081_070--Hb_003477_020 Hb_009095_020 Hb_009095_020 Hb_001081_070--Hb_009095_020 Hb_048694_010 Hb_048694_010 Hb_006331_010--Hb_048694_010 Hb_006331_010--Hb_083242_040 Hb_001715_050 Hb_001715_050 Hb_006331_010--Hb_001715_050 Hb_006331_010--Hb_009095_020 Hb_000696_200 Hb_000696_200 Hb_034168_060--Hb_000696_200 Hb_003228_060 Hb_003228_060 Hb_034168_060--Hb_003228_060 Hb_034168_060--Hb_083242_040 Hb_034168_060--Hb_001715_050 Hb_034168_060--Hb_006331_010 Hb_083242_040--Hb_001715_050 Hb_083242_040--Hb_003228_060 Hb_083242_040--Hb_000696_200 Hb_006272_010 Hb_006272_010 Hb_083242_040--Hb_006272_010 Hb_005171_020 Hb_005171_020 Hb_083242_040--Hb_005171_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0081491 0.0317518 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.54636

CAGE analysis