Hb_007645_040

Information

Type -
Description -
Location Contig7645: 15553-16053
Sequence    

Annotation

kegg
ID osa:9267701
description Os01g0791033
nr
ID AAY54101.1
description ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Tachigali myrmecophila]
swissprot
ID P28424
description Ribulose bisphosphate carboxylase large chain (Fragment) OS=Humiria balsamifera GN=rbcL PE=3 SV=1
trembl
ID Q4VIA5
description Ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit (Fragment) OS=Tachigali myrmecophila GN=rbcL PE=3 SV=1
Gene Ontology
ID GO:0009507
description ribulose- -bisphosphate carboxylase oxygenase large partial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57391: 14171-15394
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007645_040 0.0 - - ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Tachigali myrmecophila]
2 Hb_004138_020 0.0468957723 - - PREDICTED: cucumisin-like [Populus euphratica]
3 Hb_003477_020 0.0538528061 desease resistance Gene Name: AAA_29 PREDICTED: ABC transporter G family member 15-like [Populus euphratica]
4 Hb_000388_020 0.0596907759 - - PREDICTED: MLP-like protein 43 [Fragaria vesca subsp. vesca]
5 Hb_034168_060 0.0654470727 - - ribulose-1-5-bisphosphate carboxylase/oxygenase large subunit, partial (chloroplast) [Cucumis argenteus]
6 Hb_003407_050 0.067395331 - - UDP-glucuronosyltransferase, putative [Ricinus communis]
7 Hb_054839_010 0.0757308246 - - PsbC, partial (chloroplast) [Asimina parviflora]
8 Hb_005087_020 0.0793913179 - - Metalloendoproteinase 1 precursor, putative [Ricinus communis]
9 Hb_006331_010 0.0809267725 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1, partial [Populus euphratica]
10 Hb_005018_050 0.0819340077 - - PREDICTED: licodione synthase-like [Jatropha curcas]
11 Hb_007044_030 0.0829017915 - - Os06g0273400 [Oryza sativa Japonica Group]
12 Hb_106850_010 0.0839332467 - - photosystem II protein D2 [Lactuca sativa]
13 Hb_006302_050 0.0864807127 - - PREDICTED: uncharacterized protein LOC104804969, partial [Tarenaya hassleriana]
14 Hb_126973_010 0.0875190799 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g34110 [Vitis vinifera]
15 Hb_103255_010 0.0878888892 - - PREDICTED: terpene synthase 10-like [Jatropha curcas]
16 Hb_083242_040 0.0891605042 - - -
17 Hb_007595_030 0.089547155 - - psbA gene product (chloroplast) [Silene noctiflora]
18 Hb_003228_060 0.0896102857 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000696_200 0.0903555566 - - PREDICTED: GDSL esterase/lipase EXL3-like [Jatropha curcas]
20 Hb_000938_050 0.0913265934 - - hypothetical protein JCGZ_09640 [Jatropha curcas]

Gene co-expression network

sample Hb_007645_040 Hb_007645_040 Hb_004138_020 Hb_004138_020 Hb_007645_040--Hb_004138_020 Hb_003477_020 Hb_003477_020 Hb_007645_040--Hb_003477_020 Hb_000388_020 Hb_000388_020 Hb_007645_040--Hb_000388_020 Hb_034168_060 Hb_034168_060 Hb_007645_040--Hb_034168_060 Hb_003407_050 Hb_003407_050 Hb_007645_040--Hb_003407_050 Hb_054839_010 Hb_054839_010 Hb_007645_040--Hb_054839_010 Hb_004138_020--Hb_003477_020 Hb_001081_070 Hb_001081_070 Hb_004138_020--Hb_001081_070 Hb_006331_010 Hb_006331_010 Hb_004138_020--Hb_006331_010 Hb_004138_020--Hb_034168_060 Hb_083242_040 Hb_083242_040 Hb_004138_020--Hb_083242_040 Hb_005087_020 Hb_005087_020 Hb_003477_020--Hb_005087_020 Hb_000031_070 Hb_000031_070 Hb_003477_020--Hb_000031_070 Hb_001338_010 Hb_001338_010 Hb_003477_020--Hb_001338_010 Hb_001779_050 Hb_001779_050 Hb_003477_020--Hb_001779_050 Hb_000388_020--Hb_054839_010 Hb_006302_050 Hb_006302_050 Hb_000388_020--Hb_006302_050 Hb_104509_010 Hb_104509_010 Hb_000388_020--Hb_104509_010 Hb_106850_010 Hb_106850_010 Hb_000388_020--Hb_106850_010 Hb_103255_010 Hb_103255_010 Hb_000388_020--Hb_103255_010 Hb_000696_200 Hb_000696_200 Hb_034168_060--Hb_000696_200 Hb_003228_060 Hb_003228_060 Hb_034168_060--Hb_003228_060 Hb_034168_060--Hb_083242_040 Hb_001715_050 Hb_001715_050 Hb_034168_060--Hb_001715_050 Hb_034168_060--Hb_006331_010 Hb_005018_050 Hb_005018_050 Hb_003407_050--Hb_005018_050 Hb_003120_090 Hb_003120_090 Hb_003407_050--Hb_003120_090 Hb_031194_030 Hb_031194_030 Hb_003407_050--Hb_031194_030 Hb_002704_090 Hb_002704_090 Hb_003407_050--Hb_002704_090 Hb_088080_010 Hb_088080_010 Hb_003407_050--Hb_088080_010 Hb_007595_030 Hb_007595_030 Hb_003407_050--Hb_007595_030 Hb_125153_010 Hb_125153_010 Hb_054839_010--Hb_125153_010 Hb_054839_010--Hb_005087_020 Hb_151061_040 Hb_151061_040 Hb_054839_010--Hb_151061_040 Hb_054839_010--Hb_006302_050 Hb_054839_010--Hb_104509_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 1.12611 2.12125 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0436813 58.1812

CAGE analysis