Hb_000388_020

Information

Type -
Description -
Location Contig388: 9291-10017
Sequence    

Annotation

kegg
ID fve:101292084
description MLP-like protein 28-like
nr
ID XP_004291554.1
description PREDICTED: MLP-like protein 43 [Fragaria vesca subsp. vesca]
swissprot
ID Q941R6
description MLP-like protein 31 OS=Arabidopsis thaliana GN=MLP31 PE=2 SV=2
trembl
ID A0A0A0LA34
description Uncharacterized protein OS=Cucumis sativus GN=Csa_3G342860 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38915: 9195-9506
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000388_020 0.0 - - PREDICTED: MLP-like protein 43 [Fragaria vesca subsp. vesca]
2 Hb_054839_010 0.0444109638 - - PsbC, partial (chloroplast) [Asimina parviflora]
3 Hb_006302_050 0.0521933058 - - PREDICTED: uncharacterized protein LOC104804969, partial [Tarenaya hassleriana]
4 Hb_007645_040 0.0596907759 - - ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Tachigali myrmecophila]
5 Hb_104509_010 0.0604372484 - - photosystem II CP43 chlorophyll apoprotein (chloroplast) [Ficus sp. Moore 315]
6 Hb_106850_010 0.060963994 - - photosystem II protein D2 [Lactuca sativa]
7 Hb_103255_010 0.0631723493 - - PREDICTED: terpene synthase 10-like [Jatropha curcas]
8 Hb_005087_020 0.0681592247 - - Metalloendoproteinase 1 precursor, putative [Ricinus communis]
9 Hb_003477_020 0.0706384356 desease resistance Gene Name: AAA_29 PREDICTED: ABC transporter G family member 15-like [Populus euphratica]
10 Hb_000959_380 0.072561889 - - PREDICTED: (-)-alpha-terpineol synthase-like [Vitis vinifera]
11 Hb_126973_010 0.0733294265 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g34110 [Vitis vinifera]
12 Hb_005914_030 0.0737591898 - - -
13 Hb_072695_010 0.0742852777 - - PREDICTED: metalloendoproteinase 1-like [Populus euphratica]
14 Hb_154980_010 0.0744719129 - - photosystem I P700 chlorophyll A apoprotein A2 [Medicago truncatula]
15 Hb_003144_020 0.0757847332 - - (R)-limonene synthase, putative [Ricinus communis]
16 Hb_125153_010 0.0761406076 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD1-1 [Malus domestica]
17 Hb_151061_040 0.0785082573 - - putative retrotransposon protein [Phyllostachys edulis]
18 Hb_003407_050 0.0824789188 - - UDP-glucuronosyltransferase, putative [Ricinus communis]
19 Hb_002835_420 0.0825012056 - - photosystem I P700 chlorophyll A apoprotein A2 [Medicago truncatula]
20 Hb_131816_010 0.0830012504 - - PREDICTED: subtilisin-like protease SBT1.7 [Jatropha curcas]

Gene co-expression network

sample Hb_000388_020 Hb_000388_020 Hb_054839_010 Hb_054839_010 Hb_000388_020--Hb_054839_010 Hb_006302_050 Hb_006302_050 Hb_000388_020--Hb_006302_050 Hb_007645_040 Hb_007645_040 Hb_000388_020--Hb_007645_040 Hb_104509_010 Hb_104509_010 Hb_000388_020--Hb_104509_010 Hb_106850_010 Hb_106850_010 Hb_000388_020--Hb_106850_010 Hb_103255_010 Hb_103255_010 Hb_000388_020--Hb_103255_010 Hb_125153_010 Hb_125153_010 Hb_054839_010--Hb_125153_010 Hb_005087_020 Hb_005087_020 Hb_054839_010--Hb_005087_020 Hb_151061_040 Hb_151061_040 Hb_054839_010--Hb_151061_040 Hb_054839_010--Hb_006302_050 Hb_054839_010--Hb_104509_010 Hb_006302_050--Hb_104509_010 Hb_006302_050--Hb_106850_010 Hb_005914_030 Hb_005914_030 Hb_006302_050--Hb_005914_030 Hb_003144_020 Hb_003144_020 Hb_006302_050--Hb_003144_020 Hb_131816_010 Hb_131816_010 Hb_006302_050--Hb_131816_010 Hb_000959_380 Hb_000959_380 Hb_006302_050--Hb_000959_380 Hb_004138_020 Hb_004138_020 Hb_007645_040--Hb_004138_020 Hb_003477_020 Hb_003477_020 Hb_007645_040--Hb_003477_020 Hb_034168_060 Hb_034168_060 Hb_007645_040--Hb_034168_060 Hb_003407_050 Hb_003407_050 Hb_007645_040--Hb_003407_050 Hb_007645_040--Hb_054839_010 Hb_104509_010--Hb_106850_010 Hb_104509_010--Hb_003144_020 Hb_104509_010--Hb_131816_010 Hb_104509_010--Hb_005914_030 Hb_005224_020 Hb_005224_020 Hb_104509_010--Hb_005224_020 Hb_154980_010 Hb_154980_010 Hb_106850_010--Hb_154980_010 Hb_002835_420 Hb_002835_420 Hb_106850_010--Hb_002835_420 Hb_126973_010 Hb_126973_010 Hb_106850_010--Hb_126973_010 Hb_106850_010--Hb_003144_020 Hb_072695_010 Hb_072695_010 Hb_103255_010--Hb_072695_010 Hb_103255_010--Hb_000959_380 Hb_103255_010--Hb_006302_050 Hb_103255_010--Hb_003144_020 Hb_103255_010--Hb_106850_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 3.81444 7.23167 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.172644 0.271209 0 0 368.484

CAGE analysis