Hb_151061_040

Information

Type -
Description -
Location Contig151061: 19286-22693
Sequence    

Annotation

kegg
ID sita:101776990
description uncharacterized LOC101776990
nr
ID ADB85429.1
description putative retrotransposon protein [Phyllostachys edulis]
swissprot
ID P10978
description Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1
trembl
ID D3IVT9
description Putative retrotransposon protein OS=Phyllostachys edulis PE=4 SV=1
Gene Ontology
ID GO:0003677
description retrotransposon ty1-copia subclass

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_151061_040 0.0 - - putative retrotransposon protein [Phyllostachys edulis]
2 Hb_125153_010 0.0362790278 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD1-1 [Malus domestica]
3 Hb_000031_070 0.0532329709 - - Thioredoxin domain-containing protein, putative [Ricinus communis]
4 Hb_001338_010 0.0579473784 transcription factor TF Family: GNAT GCN5-related N-acetyltransferase family protein [Populus trichocarpa]
5 Hb_005087_020 0.0597080101 - - Metalloendoproteinase 1 precursor, putative [Ricinus communis]
6 Hb_054839_010 0.0617719286 - - PsbC, partial (chloroplast) [Asimina parviflora]
7 Hb_001779_050 0.0703194266 - - polyprotein [Ananas comosus]
8 Hb_176140_010 0.0712282439 - - polyprotein [Oryza australiensis]
9 Hb_003477_020 0.0718988799 desease resistance Gene Name: AAA_29 PREDICTED: ABC transporter G family member 15-like [Populus euphratica]
10 Hb_072695_010 0.07235008 - - PREDICTED: metalloendoproteinase 1-like [Populus euphratica]
11 Hb_000388_020 0.0785082573 - - PREDICTED: MLP-like protein 43 [Fragaria vesca subsp. vesca]
12 Hb_158575_010 0.095185977 - - conserved hypothetical protein [Ricinus communis]
13 Hb_157680_010 0.0957699428 - - PREDICTED: uncharacterized protein LOC103444007 [Malus domestica]
14 Hb_001790_110 0.0985593123 - - unknown [Populus trichocarpa]
15 Hb_004453_120 0.0985659983 - - ammonium transporter, putative [Ricinus communis]
16 Hb_007645_040 0.0996422481 - - ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Tachigali myrmecophila]
17 Hb_006302_050 0.1014719238 - - PREDICTED: uncharacterized protein LOC104804969, partial [Tarenaya hassleriana]
18 Hb_004138_020 0.1022719886 - - PREDICTED: cucumisin-like [Populus euphratica]
19 Hb_005914_030 0.1071419559 - - -
20 Hb_000959_380 0.1083164285 - - PREDICTED: (-)-alpha-terpineol synthase-like [Vitis vinifera]

Gene co-expression network

sample Hb_151061_040 Hb_151061_040 Hb_125153_010 Hb_125153_010 Hb_151061_040--Hb_125153_010 Hb_000031_070 Hb_000031_070 Hb_151061_040--Hb_000031_070 Hb_001338_010 Hb_001338_010 Hb_151061_040--Hb_001338_010 Hb_005087_020 Hb_005087_020 Hb_151061_040--Hb_005087_020 Hb_054839_010 Hb_054839_010 Hb_151061_040--Hb_054839_010 Hb_001779_050 Hb_001779_050 Hb_151061_040--Hb_001779_050 Hb_072695_010 Hb_072695_010 Hb_125153_010--Hb_072695_010 Hb_125153_010--Hb_054839_010 Hb_125153_010--Hb_005087_020 Hb_000388_020 Hb_000388_020 Hb_125153_010--Hb_000388_020 Hb_005914_030 Hb_005914_030 Hb_125153_010--Hb_005914_030 Hb_000031_070--Hb_001338_010 Hb_000031_070--Hb_001779_050 Hb_176140_010 Hb_176140_010 Hb_000031_070--Hb_176140_010 Hb_158575_010 Hb_158575_010 Hb_000031_070--Hb_158575_010 Hb_157680_010 Hb_157680_010 Hb_000031_070--Hb_157680_010 Hb_004453_120 Hb_004453_120 Hb_000031_070--Hb_004453_120 Hb_001338_010--Hb_001779_050 Hb_001338_010--Hb_176140_010 Hb_001338_010--Hb_158575_010 Hb_001338_010--Hb_157680_010 Hb_001338_010--Hb_004453_120 Hb_003477_020 Hb_003477_020 Hb_005087_020--Hb_003477_020 Hb_005087_020--Hb_054839_010 Hb_005087_020--Hb_000388_020 Hb_005087_020--Hb_000031_070 Hb_054839_010--Hb_000388_020 Hb_006302_050 Hb_006302_050 Hb_054839_010--Hb_006302_050 Hb_104509_010 Hb_104509_010 Hb_054839_010--Hb_104509_010 Hb_001779_050--Hb_176140_010 Hb_001779_050--Hb_158575_010 Hb_001779_050--Hb_157680_010 Hb_001779_050--Hb_004453_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.00556781 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.196908

CAGE analysis