Hb_125153_010

Information

Type -
Description -
Location Contig125153: 3-441
Sequence    

Annotation

kegg
ID mdm:103446651
description G-type lectin S-receptor-like serine/threonine-protein kinase SD1-1
nr
ID XP_008384004.1
description PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD1-1 [Malus domestica]
swissprot
ID O23082
description Putative receptor-like protein kinase At4g00960 OS=Arabidopsis thaliana GN=At4g00960 PE=3 SV=2
trembl
ID F6HD38
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0484g00020 PE=4 SV=1
Gene Ontology
ID GO:0004674
description g-type lectin s-receptor-like serine threonine-protein kinase at1g11410

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_125153_010 0.0 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD1-1 [Malus domestica]
2 Hb_151061_040 0.0362790278 - - putative retrotransposon protein [Phyllostachys edulis]
3 Hb_072695_010 0.0571232484 - - PREDICTED: metalloendoproteinase 1-like [Populus euphratica]
4 Hb_054839_010 0.0590829242 - - PsbC, partial (chloroplast) [Asimina parviflora]
5 Hb_005087_020 0.0744598899 - - Metalloendoproteinase 1 precursor, putative [Ricinus communis]
6 Hb_000388_020 0.0761406076 - - PREDICTED: MLP-like protein 43 [Fragaria vesca subsp. vesca]
7 Hb_005914_030 0.080867028 - - -
8 Hb_006302_050 0.0841374486 - - PREDICTED: uncharacterized protein LOC104804969, partial [Tarenaya hassleriana]
9 Hb_000959_380 0.0855366738 - - PREDICTED: (-)-alpha-terpineol synthase-like [Vitis vinifera]
10 Hb_001790_110 0.086654729 - - unknown [Populus trichocarpa]
11 Hb_000002_470 0.0875071241 - - hypothetical protein JCGZ_11185 [Jatropha curcas]
12 Hb_000003_630 0.0875071241 - - ATP-binding cassette transporter, putative [Ricinus communis]
13 Hb_000004_050 0.0875071241 - - PREDICTED: uncharacterized protein LOC105766968 [Gossypium raimondii]
14 Hb_000007_350 0.0875071241 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
15 Hb_000010_490 0.0875071241 - - hypothetical protein CICLE_v10027565mg, partial [Citrus clementina]
16 Hb_000017_170 0.0875071241 transcription factor TF Family: FAR1 hypothetical protein MIMGU_mgv1a025104mg, partial [Erythranthe guttata]
17 Hb_000017_240 0.0875071241 - - -
18 Hb_000022_030 0.0875071241 - - Uncharacterized protein TCM_003129 [Theobroma cacao]
19 Hb_000022_040 0.0875071241 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
20 Hb_000023_070 0.0875071241 - - hypothetical protein, partial [Cecembia lonarensis]

Gene co-expression network

sample Hb_125153_010 Hb_125153_010 Hb_151061_040 Hb_151061_040 Hb_125153_010--Hb_151061_040 Hb_072695_010 Hb_072695_010 Hb_125153_010--Hb_072695_010 Hb_054839_010 Hb_054839_010 Hb_125153_010--Hb_054839_010 Hb_005087_020 Hb_005087_020 Hb_125153_010--Hb_005087_020 Hb_000388_020 Hb_000388_020 Hb_125153_010--Hb_000388_020 Hb_005914_030 Hb_005914_030 Hb_125153_010--Hb_005914_030 Hb_000031_070 Hb_000031_070 Hb_151061_040--Hb_000031_070 Hb_001338_010 Hb_001338_010 Hb_151061_040--Hb_001338_010 Hb_151061_040--Hb_005087_020 Hb_151061_040--Hb_054839_010 Hb_001779_050 Hb_001779_050 Hb_151061_040--Hb_001779_050 Hb_001790_110 Hb_001790_110 Hb_072695_010--Hb_001790_110 Hb_000959_380 Hb_000959_380 Hb_072695_010--Hb_000959_380 Hb_072695_010--Hb_151061_040 Hb_072695_010--Hb_000388_020 Hb_072695_010--Hb_054839_010 Hb_054839_010--Hb_000388_020 Hb_054839_010--Hb_005087_020 Hb_006302_050 Hb_006302_050 Hb_054839_010--Hb_006302_050 Hb_104509_010 Hb_104509_010 Hb_054839_010--Hb_104509_010 Hb_003477_020 Hb_003477_020 Hb_005087_020--Hb_003477_020 Hb_005087_020--Hb_000388_020 Hb_005087_020--Hb_000031_070 Hb_000388_020--Hb_006302_050 Hb_007645_040 Hb_007645_040 Hb_000388_020--Hb_007645_040 Hb_000388_020--Hb_104509_010 Hb_106850_010 Hb_106850_010 Hb_000388_020--Hb_106850_010 Hb_103255_010 Hb_103255_010 Hb_000388_020--Hb_103255_010 Hb_005224_020 Hb_005224_020 Hb_005914_030--Hb_005224_020 Hb_005914_030--Hb_006302_050 Hb_005914_030--Hb_104509_010 Hb_003144_020 Hb_003144_020 Hb_005914_030--Hb_003144_020 Hb_005914_030--Hb_000959_380 Hb_131816_010 Hb_131816_010 Hb_005914_030--Hb_131816_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.26919 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 17.405

CAGE analysis