Hb_001790_110

Information

Type -
Description -
Location Contig1790: 143085-143936
Sequence    

Annotation

kegg
ID pop:POPTR_0013s10410g
description hypothetical protein
nr
ID ABK95950.1
description unknown [Populus trichocarpa]
swissprot
ID P29136
description Metalloendoproteinase 1 OS=Glycine max PE=1 SV=2
trembl
ID A9PHU7
description Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1
Gene Ontology
ID GO:0031012
description metalloendoproteinase 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001790_110 0.0 - - unknown [Populus trichocarpa]
2 Hb_072695_010 0.0626985093 - - PREDICTED: metalloendoproteinase 1-like [Populus euphratica]
3 Hb_005087_020 0.0762393562 - - Metalloendoproteinase 1 precursor, putative [Ricinus communis]
4 Hb_000907_010 0.0798526375 - - Ankyrin repeat-containing-like protein [Theobroma cacao]
5 Hb_000959_380 0.0817520996 - - PREDICTED: (-)-alpha-terpineol synthase-like [Vitis vinifera]
6 Hb_131816_010 0.0840682206 - - PREDICTED: subtilisin-like protease SBT1.7 [Jatropha curcas]
7 Hb_104509_010 0.0845094833 - - photosystem II CP43 chlorophyll apoprotein (chloroplast) [Ficus sp. Moore 315]
8 Hb_006302_050 0.0862741143 - - PREDICTED: uncharacterized protein LOC104804969, partial [Tarenaya hassleriana]
9 Hb_125153_010 0.086654729 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD1-1 [Malus domestica]
10 Hb_054839_010 0.0892446177 - - PsbC, partial (chloroplast) [Asimina parviflora]
11 Hb_000388_020 0.0897023169 - - PREDICTED: MLP-like protein 43 [Fragaria vesca subsp. vesca]
12 Hb_003144_020 0.0928604402 - - (R)-limonene synthase, putative [Ricinus communis]
13 Hb_005224_020 0.0939679535 transcription factor TF Family: MYB-related DNA binding protein, putative [Ricinus communis]
14 Hb_005914_030 0.0940668129 - - -
15 Hb_106850_010 0.097405703 - - photosystem II protein D2 [Lactuca sativa]
16 Hb_103255_010 0.0975106854 - - PREDICTED: terpene synthase 10-like [Jatropha curcas]
17 Hb_151061_040 0.0985593123 - - putative retrotransposon protein [Phyllostachys edulis]
18 Hb_000326_100 0.1022226042 transcription factor TF Family: MYB-related DnaJ homolog subfamily C member 2 [Morus notabilis]
19 Hb_154980_010 0.1059026602 - - photosystem I P700 chlorophyll A apoprotein A2 [Medicago truncatula]
20 Hb_007645_020 0.108045907 - - NAD(P)H-quinone oxidoreductase subunit [Medicago truncatula]

Gene co-expression network

sample Hb_001790_110 Hb_001790_110 Hb_072695_010 Hb_072695_010 Hb_001790_110--Hb_072695_010 Hb_005087_020 Hb_005087_020 Hb_001790_110--Hb_005087_020 Hb_000907_010 Hb_000907_010 Hb_001790_110--Hb_000907_010 Hb_000959_380 Hb_000959_380 Hb_001790_110--Hb_000959_380 Hb_131816_010 Hb_131816_010 Hb_001790_110--Hb_131816_010 Hb_104509_010 Hb_104509_010 Hb_001790_110--Hb_104509_010 Hb_125153_010 Hb_125153_010 Hb_072695_010--Hb_125153_010 Hb_072695_010--Hb_000959_380 Hb_151061_040 Hb_151061_040 Hb_072695_010--Hb_151061_040 Hb_000388_020 Hb_000388_020 Hb_072695_010--Hb_000388_020 Hb_054839_010 Hb_054839_010 Hb_072695_010--Hb_054839_010 Hb_003477_020 Hb_003477_020 Hb_005087_020--Hb_003477_020 Hb_005087_020--Hb_151061_040 Hb_005087_020--Hb_054839_010 Hb_005087_020--Hb_000388_020 Hb_000031_070 Hb_000031_070 Hb_005087_020--Hb_000031_070 Hb_005087_020--Hb_125153_010 Hb_002395_040 Hb_002395_040 Hb_000907_010--Hb_002395_040 Hb_020154_010 Hb_020154_010 Hb_000907_010--Hb_020154_010 Hb_025628_010 Hb_025628_010 Hb_000907_010--Hb_025628_010 Hb_000540_180 Hb_000540_180 Hb_000907_010--Hb_000540_180 Hb_004208_040 Hb_004208_040 Hb_000907_010--Hb_004208_040 Hb_003144_020 Hb_003144_020 Hb_000959_380--Hb_003144_020 Hb_000959_380--Hb_131816_010 Hb_005914_030 Hb_005914_030 Hb_000959_380--Hb_005914_030 Hb_000959_380--Hb_104509_010 Hb_000326_100 Hb_000326_100 Hb_000959_380--Hb_000326_100 Hb_005224_020 Hb_005224_020 Hb_000959_380--Hb_005224_020 Hb_131816_010--Hb_104509_010 Hb_006302_050 Hb_006302_050 Hb_131816_010--Hb_006302_050 Hb_131816_010--Hb_003144_020 Hb_131816_010--Hb_005224_020 Hb_131816_010--Hb_005914_030 Hb_104509_010--Hb_006302_050 Hb_106850_010 Hb_106850_010 Hb_104509_010--Hb_106850_010 Hb_104509_010--Hb_003144_020 Hb_104509_010--Hb_005914_030 Hb_104509_010--Hb_005224_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.417023 0.104032 0.510608 0.0253587 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0977101 0 0 42.9172

CAGE analysis