Hb_000907_010

Information

Type -
Description -
Location Contig907: 4788-8452
Sequence    

Annotation

kegg
ID tcc:TCM_043006
description Ankyrin repeat-containing-like protein
nr
ID XP_007009599.1
description Ankyrin repeat-containing-like protein [Theobroma cacao]
swissprot
ID Q6AWW5
description Ankyrin repeat-containing protein At5g02620 OS=Arabidopsis thaliana GN=At5g02620 PE=1 SV=1
trembl
ID A0A061FUD1
description Ankyrin repeat-containing-like protein OS=Theobroma cacao GN=TCM_043006 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000907_010 0.0 - - Ankyrin repeat-containing-like protein [Theobroma cacao]
2 Hb_002395_040 0.0638164657 - - unknown [Populus trichocarpa]
3 Hb_020154_010 0.0727146382 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
4 Hb_001790_110 0.0798526375 - - unknown [Populus trichocarpa]
5 Hb_025628_010 0.0990772584 - - PREDICTED: uncharacterized protein LOC104233990 [Nicotiana sylvestris]
6 Hb_000540_180 0.0994326714 - - PREDICTED: probable receptor protein kinase TMK1 [Jatropha curcas]
7 Hb_004208_040 0.1111549628 - - UDP-glycosyltransferase 86A1 [Morus notabilis]
8 Hb_000373_140 0.1132402951 - - PREDICTED: uncharacterized protein LOC105160092 [Sesamum indicum]
9 Hb_072695_010 0.1135082277 - - PREDICTED: metalloendoproteinase 1-like [Populus euphratica]
10 Hb_131816_010 0.1164677562 - - PREDICTED: subtilisin-like protease SBT1.7 [Jatropha curcas]
11 Hb_004987_040 0.1186666194 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
12 Hb_000002_470 0.1213769884 - - hypothetical protein JCGZ_11185 [Jatropha curcas]
13 Hb_000003_630 0.1213769884 - - ATP-binding cassette transporter, putative [Ricinus communis]
14 Hb_000004_050 0.1213769884 - - PREDICTED: uncharacterized protein LOC105766968 [Gossypium raimondii]
15 Hb_000007_350 0.1213769884 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
16 Hb_000010_490 0.1213769884 - - hypothetical protein CICLE_v10027565mg, partial [Citrus clementina]
17 Hb_000017_170 0.1213769884 transcription factor TF Family: FAR1 hypothetical protein MIMGU_mgv1a025104mg, partial [Erythranthe guttata]
18 Hb_000017_240 0.1213769884 - - -
19 Hb_000022_030 0.1213769884 - - Uncharacterized protein TCM_003129 [Theobroma cacao]
20 Hb_000022_040 0.1213769884 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]

Gene co-expression network

sample Hb_000907_010 Hb_000907_010 Hb_002395_040 Hb_002395_040 Hb_000907_010--Hb_002395_040 Hb_020154_010 Hb_020154_010 Hb_000907_010--Hb_020154_010 Hb_001790_110 Hb_001790_110 Hb_000907_010--Hb_001790_110 Hb_025628_010 Hb_025628_010 Hb_000907_010--Hb_025628_010 Hb_000540_180 Hb_000540_180 Hb_000907_010--Hb_000540_180 Hb_004208_040 Hb_004208_040 Hb_000907_010--Hb_004208_040 Hb_002395_040--Hb_020154_010 Hb_002395_040--Hb_025628_010 Hb_002395_040--Hb_000540_180 Hb_006663_080 Hb_006663_080 Hb_002395_040--Hb_006663_080 Hb_000373_140 Hb_000373_140 Hb_002395_040--Hb_000373_140 Hb_020154_010--Hb_025628_010 Hb_020154_010--Hb_000540_180 Hb_020154_010--Hb_006663_080 Hb_003625_030 Hb_003625_030 Hb_020154_010--Hb_003625_030 Hb_072695_010 Hb_072695_010 Hb_001790_110--Hb_072695_010 Hb_005087_020 Hb_005087_020 Hb_001790_110--Hb_005087_020 Hb_000959_380 Hb_000959_380 Hb_001790_110--Hb_000959_380 Hb_131816_010 Hb_131816_010 Hb_001790_110--Hb_131816_010 Hb_104509_010 Hb_104509_010 Hb_001790_110--Hb_104509_010 Hb_025628_010--Hb_000540_180 Hb_025628_010--Hb_006663_080 Hb_025628_010--Hb_003625_030 Hb_004683_030 Hb_004683_030 Hb_025628_010--Hb_004683_030 Hb_000629_090 Hb_000629_090 Hb_025628_010--Hb_000629_090 Hb_000540_180--Hb_006663_080 Hb_000540_180--Hb_003625_030 Hb_000540_180--Hb_004683_030 Hb_000540_180--Hb_000629_090 Hb_004208_040--Hb_000373_140 Hb_004987_040 Hb_004987_040 Hb_004208_040--Hb_004987_040 Hb_003144_040 Hb_003144_040 Hb_004208_040--Hb_003144_040 Hb_004208_040--Hb_131816_010 Hb_010172_020 Hb_010172_020 Hb_004208_040--Hb_010172_020 Hb_101462_010 Hb_101462_010 Hb_004208_040--Hb_101462_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0497414 0 0.00871897 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 1.94679

CAGE analysis