Hb_000373_140

Information

Type -
Description -
Location Contig373: 182120-185062
Sequence    

Annotation

kegg
ID bvg:104901272
description uncharacterized LOC104901272
nr
ID XP_011075658.1
description PREDICTED: uncharacterized protein LOC105160092 [Sesamum indicum]
swissprot
ID P04323
description Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster GN=pol PE=3 SV=1
trembl
ID A5AJD0
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_012031 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38124: 169765-192700 , PASA_asmbl_38125: 183672-184006 , PASA_asmbl_38126: 184866-185288
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000373_140 0.0 - - PREDICTED: uncharacterized protein LOC105160092 [Sesamum indicum]
2 Hb_101462_010 0.0683634928 - - PREDICTED: probable receptor-like protein kinase At5g39030 isoform X2 [Jatropha curcas]
3 Hb_004208_040 0.0702573525 - - UDP-glycosyltransferase 86A1 [Morus notabilis]
4 Hb_079902_010 0.0827860615 - - cytochrome c biogenesis B (mitochondrion) [Hevea brasiliensis]
5 Hb_004987_040 0.093138971 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
6 Hb_004375_020 0.095278365 - - hypothetical protein VITISV_034560 [Vitis vinifera]
7 Hb_000123_070 0.0978983733 - - PREDICTED: terpene synthase 10-like [Jatropha curcas]
8 Hb_001508_010 0.0991399196 - - conserved hypothetical protein [Ricinus communis]
9 Hb_002395_040 0.1008073693 - - unknown [Populus trichocarpa]
10 Hb_000907_010 0.1132402951 - - Ankyrin repeat-containing-like protein [Theobroma cacao]
11 Hb_002553_030 0.1145808766 - - hypothetical protein POPTR_0008s16550g [Populus trichocarpa]
12 Hb_000879_260 0.1166871787 - - PREDICTED: F-box/kelch-repeat protein At5g43190 [Jatropha curcas]
13 Hb_131816_010 0.1202752159 - - PREDICTED: subtilisin-like protease SBT1.7 [Jatropha curcas]
14 Hb_020154_010 0.1231511491 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
15 Hb_077242_020 0.1235459345 - - ribosomal protein S4 (mitochondrion) [Ricinus communis]
16 Hb_006040_020 0.1238900544 - - ATPase subunit 8 (mitochondrion) [Hevea brasiliensis]
17 Hb_001790_110 0.1282799332 - - unknown [Populus trichocarpa]
18 Hb_025628_010 0.1319389569 - - PREDICTED: uncharacterized protein LOC104233990 [Nicotiana sylvestris]
19 Hb_010053_060 0.1319855449 - - ATP-binding cassette transporter, putative [Ricinus communis]
20 Hb_000540_180 0.1320970275 - - PREDICTED: probable receptor protein kinase TMK1 [Jatropha curcas]

Gene co-expression network

sample Hb_000373_140 Hb_000373_140 Hb_101462_010 Hb_101462_010 Hb_000373_140--Hb_101462_010 Hb_004208_040 Hb_004208_040 Hb_000373_140--Hb_004208_040 Hb_079902_010 Hb_079902_010 Hb_000373_140--Hb_079902_010 Hb_004987_040 Hb_004987_040 Hb_000373_140--Hb_004987_040 Hb_004375_020 Hb_004375_020 Hb_000373_140--Hb_004375_020 Hb_000123_070 Hb_000123_070 Hb_000373_140--Hb_000123_070 Hb_101462_010--Hb_000123_070 Hb_101462_010--Hb_004208_040 Hb_101462_010--Hb_079902_010 Hb_101462_010--Hb_004987_040 Hb_101462_010--Hb_004375_020 Hb_004208_040--Hb_004987_040 Hb_003144_040 Hb_003144_040 Hb_004208_040--Hb_003144_040 Hb_131816_010 Hb_131816_010 Hb_004208_040--Hb_131816_010 Hb_010172_020 Hb_010172_020 Hb_004208_040--Hb_010172_020 Hb_001508_010 Hb_001508_010 Hb_079902_010--Hb_001508_010 Hb_077242_020 Hb_077242_020 Hb_079902_010--Hb_077242_020 Hb_002395_040 Hb_002395_040 Hb_079902_010--Hb_002395_040 Hb_079902_010--Hb_004208_040 Hb_004987_040--Hb_004375_020 Hb_006040_020 Hb_006040_020 Hb_004987_040--Hb_006040_020 Hb_010053_060 Hb_010053_060 Hb_004987_040--Hb_010053_060 Hb_004987_040--Hb_131816_010 Hb_004375_020--Hb_004208_040 Hb_004375_020--Hb_000123_070 Hb_004375_020--Hb_010053_060 Hb_161881_010 Hb_161881_010 Hb_000123_070--Hb_161881_010 Hb_012528_040 Hb_012528_040 Hb_000123_070--Hb_012528_040 Hb_007595_030 Hb_007595_030 Hb_000123_070--Hb_007595_030 Hb_000938_050 Hb_000938_050 Hb_000123_070--Hb_000938_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0341408 0.0134571 0.00607348 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00611711 0.816173

CAGE analysis