Hb_004375_020

Information

Type -
Description -
Location Contig4375: 3886-6970
Sequence    

Annotation

kegg
ID vvi:104882159
description uncharacterized LOC104882159
nr
ID CAN80320.1
description hypothetical protein VITISV_034560 [Vitis vinifera]
swissprot
ID P10978
description Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1
trembl
ID A5BVC1
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_027174 PE=4 SV=1
Gene Ontology
ID GO:0043229
description hypothetical protein VITISV_027174

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004375_020 0.0 - - hypothetical protein VITISV_034560 [Vitis vinifera]
2 Hb_004987_040 0.0796810789 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
3 Hb_000373_140 0.095278365 - - PREDICTED: uncharacterized protein LOC105160092 [Sesamum indicum]
4 Hb_004208_040 0.0990009256 - - UDP-glycosyltransferase 86A1 [Morus notabilis]
5 Hb_101462_010 0.1021988461 - - PREDICTED: probable receptor-like protein kinase At5g39030 isoform X2 [Jatropha curcas]
6 Hb_000123_070 0.1062481518 - - PREDICTED: terpene synthase 10-like [Jatropha curcas]
7 Hb_010053_060 0.1174272343 - - ATP-binding cassette transporter, putative [Ricinus communis]
8 Hb_000284_050 0.1207481571 - - hypothetical protein L484_026849 [Morus notabilis]
9 Hb_014109_020 0.1211804169 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 53 [Jatropha curcas]
10 Hb_000405_010 0.1263662418 - - hypothetical protein JCGZ_15779 [Jatropha curcas]
11 Hb_010053_050 0.130471269 - - hypothetical protein POPTR_0530s002102g, partial [Populus trichocarpa]
12 Hb_002041_010 0.1333818477 - - -
13 Hb_013420_050 0.1336913819 - - hypothetical protein (mitochondrion) [Vicia faba]
14 Hb_000497_310 0.1354966469 - - conserved hypothetical protein [Ricinus communis]
15 Hb_012528_040 0.136206911 - - -
16 Hb_023547_010 0.1382785736 - - protein binding protein, putative [Ricinus communis]
17 Hb_004161_040 0.1384246471 - - PREDICTED: putative receptor-like protein kinase At4g00960 [Populus euphratica]
18 Hb_011931_090 0.138607334 - - -
19 Hb_003144_040 0.1402314065 - - PREDICTED: terpene synthase 10-like [Jatropha curcas]
20 Hb_009355_010 0.1412061661 - - PREDICTED: putative wall-associated receptor kinase-like 16 [Nelumbo nucifera]

Gene co-expression network

sample Hb_004375_020 Hb_004375_020 Hb_004987_040 Hb_004987_040 Hb_004375_020--Hb_004987_040 Hb_000373_140 Hb_000373_140 Hb_004375_020--Hb_000373_140 Hb_004208_040 Hb_004208_040 Hb_004375_020--Hb_004208_040 Hb_101462_010 Hb_101462_010 Hb_004375_020--Hb_101462_010 Hb_000123_070 Hb_000123_070 Hb_004375_020--Hb_000123_070 Hb_010053_060 Hb_010053_060 Hb_004375_020--Hb_010053_060 Hb_004987_040--Hb_004208_040 Hb_006040_020 Hb_006040_020 Hb_004987_040--Hb_006040_020 Hb_004987_040--Hb_010053_060 Hb_004987_040--Hb_000373_140 Hb_131816_010 Hb_131816_010 Hb_004987_040--Hb_131816_010 Hb_000373_140--Hb_101462_010 Hb_000373_140--Hb_004208_040 Hb_079902_010 Hb_079902_010 Hb_000373_140--Hb_079902_010 Hb_000373_140--Hb_000123_070 Hb_003144_040 Hb_003144_040 Hb_004208_040--Hb_003144_040 Hb_004208_040--Hb_131816_010 Hb_010172_020 Hb_010172_020 Hb_004208_040--Hb_010172_020 Hb_004208_040--Hb_101462_010 Hb_101462_010--Hb_000123_070 Hb_101462_010--Hb_079902_010 Hb_101462_010--Hb_004987_040 Hb_161881_010 Hb_161881_010 Hb_000123_070--Hb_161881_010 Hb_012528_040 Hb_012528_040 Hb_000123_070--Hb_012528_040 Hb_007595_030 Hb_007595_030 Hb_000123_070--Hb_007595_030 Hb_000938_050 Hb_000938_050 Hb_000123_070--Hb_000938_050 Hb_010053_050 Hb_010053_050 Hb_010053_060--Hb_010053_050 Hb_000284_050 Hb_000284_050 Hb_010053_060--Hb_000284_050 Hb_010053_060--Hb_131816_010 Hb_010053_060--Hb_000938_050 Hb_004161_040 Hb_004161_040 Hb_010053_060--Hb_004161_040 Hb_000959_380 Hb_000959_380 Hb_010053_060--Hb_000959_380
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.00869885 0.00824361 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00750095 0.278318

CAGE analysis