Hb_004161_040

Information

Type -
Description -
Location Contig4161: 42462-45768
Sequence    

Annotation

kegg
ID cic:CICLE_v10000623mg
description hypothetical protein
nr
ID XP_011007634.1
description PREDICTED: putative receptor-like protein kinase At4g00960 [Populus euphratica]
swissprot
ID O23081
description Cysteine-rich receptor-like protein kinase 41 OS=Arabidopsis thaliana GN=CRK41 PE=3 SV=2
trembl
ID V4TA41
description Uncharacterized protein OS=Citrus clementina GN=CICLE_v10000623mg PE=3 SV=1
Gene Ontology
ID GO:0004672
description cysteine-rich rlk

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004161_040 0.0 - - PREDICTED: putative receptor-like protein kinase At4g00960 [Populus euphratica]
2 Hb_007219_010 0.0626643686 - - -
3 Hb_059280_010 0.0634665926 - - hypothetical protein POPTR_0019s02860g [Populus trichocarpa]
4 Hb_002276_110 0.0640137038 - - protein binding protein, putative [Ricinus communis]
5 Hb_000284_050 0.0674993364 - - hypothetical protein L484_026849 [Morus notabilis]
6 Hb_000574_080 0.0684919914 - - PREDICTED: uncharacterized protein LOC104106381 [Nicotiana tomentosiformis]
7 Hb_010053_050 0.0691590056 - - hypothetical protein POPTR_0530s002102g, partial [Populus trichocarpa]
8 Hb_001627_070 0.0725617103 transcription factor TF Family: MIKC PREDICTED: developmental protein SEPALLATA 1 [Nelumbo nucifera]
9 Hb_004567_080 0.0771886527 - - Xyloglucan endotransglucosylase/hydrolase protein 2 precursor, putative [Ricinus communis]
10 Hb_004643_030 0.0772249559 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000938_050 0.0773681012 - - hypothetical protein JCGZ_09640 [Jatropha curcas]
12 Hb_012184_020 0.0805534261 - - conserved hypothetical protein [Ricinus communis]
13 Hb_177343_020 0.0811240051 - - PREDICTED: uncharacterized protein LOC104751876 [Camelina sativa]
14 Hb_010053_060 0.081208239 - - ATP-binding cassette transporter, putative [Ricinus communis]
15 Hb_002395_010 0.0833878716 - - -
16 Hb_000627_060 0.0838317198 - - -
17 Hb_005622_090 0.0848612659 - - hypothetical protein CICLE_v10027074mg [Citrus clementina]
18 Hb_002704_090 0.0861873183 - - cytochrome P450, putative [Ricinus communis]
19 Hb_007741_060 0.0862413377 - - PREDICTED: putative lipid-binding protein At4g00165 [Jatropha curcas]
20 Hb_002093_010 0.0895990345 - - PREDICTED: non-symbiotic hemoglobin 2 [Jatropha curcas]

Gene co-expression network

sample Hb_004161_040 Hb_004161_040 Hb_007219_010 Hb_007219_010 Hb_004161_040--Hb_007219_010 Hb_059280_010 Hb_059280_010 Hb_004161_040--Hb_059280_010 Hb_002276_110 Hb_002276_110 Hb_004161_040--Hb_002276_110 Hb_000284_050 Hb_000284_050 Hb_004161_040--Hb_000284_050 Hb_000574_080 Hb_000574_080 Hb_004161_040--Hb_000574_080 Hb_010053_050 Hb_010053_050 Hb_004161_040--Hb_010053_050 Hb_007219_010--Hb_059280_010 Hb_007219_010--Hb_002276_110 Hb_007219_010--Hb_000574_080 Hb_001627_070 Hb_001627_070 Hb_007219_010--Hb_001627_070 Hb_004567_080 Hb_004567_080 Hb_007219_010--Hb_004567_080 Hb_004643_030 Hb_004643_030 Hb_007219_010--Hb_004643_030 Hb_059280_010--Hb_002276_110 Hb_059280_010--Hb_004567_080 Hb_059280_010--Hb_004643_030 Hb_059280_010--Hb_000574_080 Hb_177343_020 Hb_177343_020 Hb_059280_010--Hb_177343_020 Hb_002276_110--Hb_004567_080 Hb_002276_110--Hb_004643_030 Hb_002276_110--Hb_177343_020 Hb_002276_110--Hb_000574_080 Hb_000284_050--Hb_010053_050 Hb_010053_060 Hb_010053_060 Hb_000284_050--Hb_010053_060 Hb_002041_010 Hb_002041_010 Hb_000284_050--Hb_002041_010 Hb_000497_310 Hb_000497_310 Hb_000284_050--Hb_000497_310 Hb_000938_050 Hb_000938_050 Hb_000284_050--Hb_000938_050 Hb_000574_080--Hb_001627_070 Hb_012184_020 Hb_012184_020 Hb_000574_080--Hb_012184_020 Hb_002395_010 Hb_002395_010 Hb_000574_080--Hb_002395_010 Hb_005622_090 Hb_005622_090 Hb_000574_080--Hb_005622_090 Hb_010053_050--Hb_010053_060 Hb_010053_050--Hb_000938_050 Hb_131816_010 Hb_131816_010 Hb_010053_050--Hb_131816_010 Hb_010053_050--Hb_005622_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0439451 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00799969 0.97289

CAGE analysis