Hb_010053_060

Information

Type -
Description -
Location Contig10053: 49730-52561
Sequence    

Annotation

kegg
ID rcu:RCOM_0768320
description ATP-binding cassette transporter, putative (EC:3.6.3.28)
nr
ID XP_002531674.1
description ATP-binding cassette transporter, putative [Ricinus communis]
swissprot
ID Q9ZUU9
description ABC transporter G family member 3 OS=Arabidopsis thaliana GN=ABCG3 PE=1 SV=2
trembl
ID B9T0A5
description ATP-binding cassette transporter, putative OS=Ricinus communis GN=RCOM_0768320 PE=3 SV=1
Gene Ontology
ID GO:0000166
description abc transporter g family member 11-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010053_060 0.0 - - ATP-binding cassette transporter, putative [Ricinus communis]
2 Hb_010053_050 0.0324322435 - - hypothetical protein POPTR_0530s002102g, partial [Populus trichocarpa]
3 Hb_000284_050 0.0578358513 - - hypothetical protein L484_026849 [Morus notabilis]
4 Hb_131816_010 0.0687604427 - - PREDICTED: subtilisin-like protease SBT1.7 [Jatropha curcas]
5 Hb_000938_050 0.0744569682 - - hypothetical protein JCGZ_09640 [Jatropha curcas]
6 Hb_004161_040 0.081208239 - - PREDICTED: putative receptor-like protein kinase At4g00960 [Populus euphratica]
7 Hb_000959_380 0.0878117468 - - PREDICTED: (-)-alpha-terpineol synthase-like [Vitis vinifera]
8 Hb_002835_420 0.0881379106 - - photosystem I P700 chlorophyll A apoprotein A2 [Medicago truncatula]
9 Hb_000326_100 0.0914348863 transcription factor TF Family: MYB-related DnaJ homolog subfamily C member 2 [Morus notabilis]
10 Hb_003144_020 0.0914672413 - - (R)-limonene synthase, putative [Ricinus communis]
11 Hb_104509_010 0.0919678618 - - photosystem II CP43 chlorophyll apoprotein (chloroplast) [Ficus sp. Moore 315]
12 Hb_002041_010 0.0921556363 - - -
13 Hb_004987_040 0.0927455202 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
14 Hb_006302_050 0.093269519 - - PREDICTED: uncharacterized protein LOC104804969, partial [Tarenaya hassleriana]
15 Hb_154980_010 0.0933464056 - - photosystem I P700 chlorophyll A apoprotein A2 [Medicago truncatula]
16 Hb_106850_010 0.0984199724 - - photosystem II protein D2 [Lactuca sativa]
17 Hb_010172_020 0.0984646568 - - PREDICTED: tyrosine/DOPA decarboxylase 1-like [Jatropha curcas]
18 Hb_007645_010 0.0986343202 - - NdhE, partial (chloroplast) [Podocalyx loranthoides]
19 Hb_005622_090 0.1005480286 - - hypothetical protein CICLE_v10027074mg [Citrus clementina]
20 Hb_002395_010 0.1005842525 - - -

Gene co-expression network

sample Hb_010053_060 Hb_010053_060 Hb_010053_050 Hb_010053_050 Hb_010053_060--Hb_010053_050 Hb_000284_050 Hb_000284_050 Hb_010053_060--Hb_000284_050 Hb_131816_010 Hb_131816_010 Hb_010053_060--Hb_131816_010 Hb_000938_050 Hb_000938_050 Hb_010053_060--Hb_000938_050 Hb_004161_040 Hb_004161_040 Hb_010053_060--Hb_004161_040 Hb_000959_380 Hb_000959_380 Hb_010053_060--Hb_000959_380 Hb_010053_050--Hb_000284_050 Hb_010053_050--Hb_004161_040 Hb_010053_050--Hb_000938_050 Hb_010053_050--Hb_131816_010 Hb_005622_090 Hb_005622_090 Hb_010053_050--Hb_005622_090 Hb_002041_010 Hb_002041_010 Hb_000284_050--Hb_002041_010 Hb_000284_050--Hb_004161_040 Hb_000497_310 Hb_000497_310 Hb_000284_050--Hb_000497_310 Hb_000284_050--Hb_000938_050 Hb_131816_010--Hb_000959_380 Hb_104509_010 Hb_104509_010 Hb_131816_010--Hb_104509_010 Hb_006302_050 Hb_006302_050 Hb_131816_010--Hb_006302_050 Hb_003144_020 Hb_003144_020 Hb_131816_010--Hb_003144_020 Hb_005224_020 Hb_005224_020 Hb_131816_010--Hb_005224_020 Hb_005914_030 Hb_005914_030 Hb_131816_010--Hb_005914_030 Hb_005018_050 Hb_005018_050 Hb_000938_050--Hb_005018_050 Hb_003407_050 Hb_003407_050 Hb_000938_050--Hb_003407_050 Hb_031194_030 Hb_031194_030 Hb_000938_050--Hb_031194_030 Hb_003120_090 Hb_003120_090 Hb_000938_050--Hb_003120_090 Hb_002704_090 Hb_002704_090 Hb_000938_050--Hb_002704_090 Hb_002835_420 Hb_002835_420 Hb_000938_050--Hb_002835_420 Hb_007219_010 Hb_007219_010 Hb_004161_040--Hb_007219_010 Hb_059280_010 Hb_059280_010 Hb_004161_040--Hb_059280_010 Hb_002276_110 Hb_002276_110 Hb_004161_040--Hb_002276_110 Hb_000574_080 Hb_000574_080 Hb_004161_040--Hb_000574_080 Hb_000959_380--Hb_003144_020 Hb_000959_380--Hb_005914_030 Hb_000959_380--Hb_104509_010 Hb_000326_100 Hb_000326_100 Hb_000959_380--Hb_000326_100 Hb_000959_380--Hb_005224_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0109203 0.130307 0.0208932 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.103767 6.48865

CAGE analysis