Hb_002041_010

Information

Type -
Description -
Location Contig2041: 26137-26568
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002041_010 0.0 - - -
2 Hb_000497_310 0.0320986747 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000284_050 0.0635134613 - - hypothetical protein L484_026849 [Morus notabilis]
4 Hb_015824_020 0.0774016976 - - -
5 Hb_023386_030 0.0774345151 - - -
6 Hb_010053_050 0.0904369454 - - hypothetical protein POPTR_0530s002102g, partial [Populus trichocarpa]
7 Hb_010053_060 0.0921556363 - - ATP-binding cassette transporter, putative [Ricinus communis]
8 Hb_004161_040 0.1130001751 - - PREDICTED: putative receptor-like protein kinase At4g00960 [Populus euphratica]
9 Hb_004968_090 0.1229768969 - - PREDICTED: uncharacterized protein LOC104882781 [Vitis vinifera]
10 Hb_000938_050 0.1244849671 - - hypothetical protein JCGZ_09640 [Jatropha curcas]
11 Hb_005666_030 0.1244882155 - - PREDICTED: uncharacterized protein LOC103489421 [Cucumis melo]
12 Hb_005300_050 0.130024602 - - hypothetical protein VITISV_001308 [Vitis vinifera]
13 Hb_003908_010 0.1300418557 - - polyprotein [Oryza australiensis]
14 Hb_001255_070 0.130090665 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
15 Hb_000917_020 0.1301360354 - - polyprotein [Citrus endogenous pararetrovirus]
16 Hb_007524_040 0.1301486457 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101511096 [Cicer arietinum]
17 Hb_005352_020 0.1306183023 - - -
18 Hb_000051_100 0.1309383425 - - hypothetical protein MIMGU_mgv1a025286mg [Erythranthe guttata]
19 Hb_003898_010 0.1309997068 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
20 Hb_010523_020 0.1310816875 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]

Gene co-expression network

sample Hb_002041_010 Hb_002041_010 Hb_000497_310 Hb_000497_310 Hb_002041_010--Hb_000497_310 Hb_000284_050 Hb_000284_050 Hb_002041_010--Hb_000284_050 Hb_015824_020 Hb_015824_020 Hb_002041_010--Hb_015824_020 Hb_023386_030 Hb_023386_030 Hb_002041_010--Hb_023386_030 Hb_010053_050 Hb_010053_050 Hb_002041_010--Hb_010053_050 Hb_010053_060 Hb_010053_060 Hb_002041_010--Hb_010053_060 Hb_000497_310--Hb_015824_020 Hb_000497_310--Hb_023386_030 Hb_000497_310--Hb_000284_050 Hb_004968_090 Hb_004968_090 Hb_000497_310--Hb_004968_090 Hb_005666_030 Hb_005666_030 Hb_000497_310--Hb_005666_030 Hb_000284_050--Hb_010053_050 Hb_000284_050--Hb_010053_060 Hb_004161_040 Hb_004161_040 Hb_000284_050--Hb_004161_040 Hb_000938_050 Hb_000938_050 Hb_000284_050--Hb_000938_050 Hb_015824_020--Hb_023386_030 Hb_015824_020--Hb_005666_030 Hb_015824_020--Hb_004968_090 Hb_005551_030 Hb_005551_030 Hb_015824_020--Hb_005551_030 Hb_023386_030--Hb_005666_030 Hb_023386_030--Hb_004968_090 Hb_023386_030--Hb_005551_030 Hb_010053_050--Hb_010053_060 Hb_010053_050--Hb_004161_040 Hb_010053_050--Hb_000938_050 Hb_131816_010 Hb_131816_010 Hb_010053_050--Hb_131816_010 Hb_005622_090 Hb_005622_090 Hb_010053_050--Hb_005622_090 Hb_010053_060--Hb_131816_010 Hb_010053_060--Hb_000938_050 Hb_010053_060--Hb_004161_040 Hb_000959_380 Hb_000959_380 Hb_010053_060--Hb_000959_380
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 6.50583 0.318038 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 9.63485 188.515

CAGE analysis