Hb_005551_030

Information

Type -
Description -
Location Contig5551: 47644-48439
Sequence    

Annotation

kegg
ID cic:CICLE_v10011749mg
description hypothetical protein
nr
ID XP_012074325.1
description PREDICTED: mediator of RNA polymerase II transcription subunit 27 [Jatropha curcas]
swissprot
ID Q8RWM3
description Mediator of RNA polymerase II transcription subunit 27 OS=Arabidopsis thaliana GN=MED27 PE=1 SV=1
trembl
ID A0A067KW98
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08763 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005551_030 0.0 - - PREDICTED: mediator of RNA polymerase II transcription subunit 27 [Jatropha curcas]
2 Hb_001231_020 0.0152195395 - - -
3 Hb_005666_030 0.0152493763 - - PREDICTED: uncharacterized protein LOC103489421 [Cucumis melo]
4 Hb_004968_090 0.0175028454 - - PREDICTED: uncharacterized protein LOC104882781 [Vitis vinifera]
5 Hb_106274_010 0.032810261 - - hypothetical protein VITISV_008825 [Vitis vinifera]
6 Hb_001691_130 0.0367000053 - - PREDICTED: uncharacterized protein LOC104587431 [Nelumbo nucifera]
7 Hb_002630_030 0.061881424 - - OSIGBa0132I10.1 [Oryza sativa Indica Group]
8 Hb_011987_010 0.077827626 - - PREDICTED: uncharacterized protein LOC105634770 [Jatropha curcas]
9 Hb_015824_020 0.0829515401 - - -
10 Hb_000367_150 0.0862346994 - - -
11 Hb_023386_030 0.0864636718 - - -
12 Hb_019135_010 0.1087526392 - - -
13 Hb_000497_310 0.1207528438 - - conserved hypothetical protein [Ricinus communis]
14 Hb_007632_140 0.122210096 - - -
15 Hb_007456_030 0.1252288762 - - -
16 Hb_011716_120 0.1351617514 - - PREDICTED: uncharacterized protein LOC104602430 [Nelumbo nucifera]
17 Hb_002041_010 0.1389986702 - - -
18 Hb_000476_030 0.1392398933 - - PREDICTED: uncharacterized protein LOC105629366 [Jatropha curcas]
19 Hb_005029_030 0.1413156288 - - PREDICTED: LOW QUALITY PROTEIN: 36.4 kDa proline-rich protein-like [Sesamum indicum]
20 Hb_014109_020 0.1439671009 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 53 [Jatropha curcas]

Gene co-expression network

sample Hb_005551_030 Hb_005551_030 Hb_001231_020 Hb_001231_020 Hb_005551_030--Hb_001231_020 Hb_005666_030 Hb_005666_030 Hb_005551_030--Hb_005666_030 Hb_004968_090 Hb_004968_090 Hb_005551_030--Hb_004968_090 Hb_106274_010 Hb_106274_010 Hb_005551_030--Hb_106274_010 Hb_001691_130 Hb_001691_130 Hb_005551_030--Hb_001691_130 Hb_002630_030 Hb_002630_030 Hb_005551_030--Hb_002630_030 Hb_001231_020--Hb_106274_010 Hb_001231_020--Hb_005666_030 Hb_001231_020--Hb_004968_090 Hb_001231_020--Hb_001691_130 Hb_001231_020--Hb_002630_030 Hb_005666_030--Hb_004968_090 Hb_005666_030--Hb_001691_130 Hb_005666_030--Hb_106274_010 Hb_005666_030--Hb_002630_030 Hb_004968_090--Hb_001691_130 Hb_004968_090--Hb_106274_010 Hb_004968_090--Hb_002630_030 Hb_106274_010--Hb_001691_130 Hb_011987_010 Hb_011987_010 Hb_106274_010--Hb_011987_010 Hb_001691_130--Hb_002630_030 Hb_000367_150 Hb_000367_150 Hb_002630_030--Hb_000367_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0384212 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0355675 0.331302

CAGE analysis