Hb_002630_030

Information

Type -
Description -
Location Contig2630: 74467-79333
Sequence    

Annotation

kegg
ID egr:104417177
description uncharacterized LOC104417177
nr
ID CAH65865.1
description OSIGBa0132I10.1 [Oryza sativa Indica Group]
swissprot
ID P0CT40
description Transposon Tf2-9 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-9 PE=3 SV=1
trembl
ID Q01N00
description OSIGBa0132I10.1 protein OS=Oryza sativa GN=OSIGBa0132I10.1 PE=4 SV=1
Gene Ontology
ID GO:0005488
description retrotransposon ty3-gypsy subclass

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002630_030 0.0 - - OSIGBa0132I10.1 [Oryza sativa Indica Group]
2 Hb_001691_130 0.0262469612 - - PREDICTED: uncharacterized protein LOC104587431 [Nelumbo nucifera]
3 Hb_004968_090 0.054527386 - - PREDICTED: uncharacterized protein LOC104882781 [Vitis vinifera]
4 Hb_005666_030 0.0605925347 - - PREDICTED: uncharacterized protein LOC103489421 [Cucumis melo]
5 Hb_005551_030 0.061881424 - - PREDICTED: mediator of RNA polymerase II transcription subunit 27 [Jatropha curcas]
6 Hb_001231_020 0.0675322001 - - -
7 Hb_000367_150 0.0806557555 - - -
8 Hb_106274_010 0.085268174 - - hypothetical protein VITISV_008825 [Vitis vinifera]
9 Hb_007456_030 0.1072858114 - - -
10 Hb_015824_020 0.1110233709 - - -
11 Hb_023386_030 0.1151524595 - - -
12 Hb_000497_310 0.1182065352 - - conserved hypothetical protein [Ricinus communis]
13 Hb_105785_010 0.1210236596 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
14 Hb_014109_020 0.1244367571 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 53 [Jatropha curcas]
15 Hb_005029_030 0.1306381323 - - PREDICTED: LOW QUALITY PROTEIN: 36.4 kDa proline-rich protein-like [Sesamum indicum]
16 Hb_002041_010 0.1346303692 - - -
17 Hb_011987_010 0.138614043 - - PREDICTED: uncharacterized protein LOC105634770 [Jatropha curcas]
18 Hb_000134_240 0.1442412501 - - cytochrome P450, putative [Ricinus communis]
19 Hb_019135_010 0.1470141521 - - -
20 Hb_052469_020 0.1526731529 - - PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 2 [Vitis vinifera]

Gene co-expression network

sample Hb_002630_030 Hb_002630_030 Hb_001691_130 Hb_001691_130 Hb_002630_030--Hb_001691_130 Hb_004968_090 Hb_004968_090 Hb_002630_030--Hb_004968_090 Hb_005666_030 Hb_005666_030 Hb_002630_030--Hb_005666_030 Hb_005551_030 Hb_005551_030 Hb_002630_030--Hb_005551_030 Hb_001231_020 Hb_001231_020 Hb_002630_030--Hb_001231_020 Hb_000367_150 Hb_000367_150 Hb_002630_030--Hb_000367_150 Hb_001691_130--Hb_004968_090 Hb_001691_130--Hb_005551_030 Hb_001691_130--Hb_005666_030 Hb_001691_130--Hb_001231_020 Hb_106274_010 Hb_106274_010 Hb_001691_130--Hb_106274_010 Hb_004968_090--Hb_005666_030 Hb_004968_090--Hb_005551_030 Hb_004968_090--Hb_001231_020 Hb_004968_090--Hb_106274_010 Hb_005666_030--Hb_005551_030 Hb_005666_030--Hb_001231_020 Hb_005666_030--Hb_106274_010 Hb_005551_030--Hb_001231_020 Hb_005551_030--Hb_106274_010 Hb_001231_020--Hb_106274_010 Hb_007456_030 Hb_007456_030 Hb_000367_150--Hb_007456_030 Hb_000367_150--Hb_001691_130 Hb_000367_150--Hb_001231_020 Hb_000367_150--Hb_106274_010 Hb_000367_150--Hb_005551_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.00694618 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0033173 0.0538606

CAGE analysis