Hb_007456_030

Information

Type -
Description -
Location Contig7456: 51162-54761
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007456_030 0.0 - - -
2 Hb_000367_150 0.0402938323 - - -
3 Hb_052469_020 0.0558045106 - - PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 2 [Vitis vinifera]
4 Hb_105785_010 0.0563717459 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
5 Hb_007595_040 0.0572514411 - - ribosomal protein L2 (chloroplast) [Berberis bealei]
6 Hb_005337_010 0.0751049701 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Vitis vinifera]
7 Hb_001691_130 0.1059229478 - - PREDICTED: uncharacterized protein LOC104587431 [Nelumbo nucifera]
8 Hb_002630_030 0.1072858114 - - OSIGBa0132I10.1 [Oryza sativa Indica Group]
9 Hb_043960_010 0.1076095058 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
10 Hb_019135_010 0.1150829015 - - -
11 Hb_001231_020 0.1155390452 - - -
12 Hb_106274_010 0.1168877133 - - hypothetical protein VITISV_008825 [Vitis vinifera]
13 Hb_002762_010 0.1188670838 - - hypothetical protein POPTR_0019s12360g [Populus trichocarpa]
14 Hb_005551_030 0.1252288762 - - PREDICTED: mediator of RNA polymerase II transcription subunit 27 [Jatropha curcas]
15 Hb_007632_140 0.1287552624 - - -
16 Hb_004968_090 0.1336331464 - - PREDICTED: uncharacterized protein LOC104882781 [Vitis vinifera]
17 Hb_005666_030 0.1364613288 - - PREDICTED: uncharacterized protein LOC103489421 [Cucumis melo]
18 Hb_005029_030 0.1368746181 - - PREDICTED: LOW QUALITY PROTEIN: 36.4 kDa proline-rich protein-like [Sesamum indicum]
19 Hb_000362_100 0.1383181533 - - -
20 Hb_000134_240 0.1483472104 - - cytochrome P450, putative [Ricinus communis]

Gene co-expression network

sample Hb_007456_030 Hb_007456_030 Hb_000367_150 Hb_000367_150 Hb_007456_030--Hb_000367_150 Hb_052469_020 Hb_052469_020 Hb_007456_030--Hb_052469_020 Hb_105785_010 Hb_105785_010 Hb_007456_030--Hb_105785_010 Hb_007595_040 Hb_007595_040 Hb_007456_030--Hb_007595_040 Hb_005337_010 Hb_005337_010 Hb_007456_030--Hb_005337_010 Hb_001691_130 Hb_001691_130 Hb_007456_030--Hb_001691_130 Hb_000367_150--Hb_001691_130 Hb_001231_020 Hb_001231_020 Hb_000367_150--Hb_001231_020 Hb_106274_010 Hb_106274_010 Hb_000367_150--Hb_106274_010 Hb_002630_030 Hb_002630_030 Hb_000367_150--Hb_002630_030 Hb_005551_030 Hb_005551_030 Hb_000367_150--Hb_005551_030 Hb_052469_020--Hb_007595_040 Hb_052469_020--Hb_105785_010 Hb_052469_020--Hb_005337_010 Hb_052469_020--Hb_000367_150 Hb_002762_010 Hb_002762_010 Hb_052469_020--Hb_002762_010 Hb_105785_010--Hb_007595_040 Hb_105785_010--Hb_000367_150 Hb_105785_010--Hb_005337_010 Hb_000134_240 Hb_000134_240 Hb_105785_010--Hb_000134_240 Hb_007595_040--Hb_005337_010 Hb_007595_040--Hb_000367_150 Hb_007595_040--Hb_002762_010 Hb_005337_010--Hb_002762_010 Hb_043960_010 Hb_043960_010 Hb_005337_010--Hb_043960_010 Hb_018746_010 Hb_018746_010 Hb_005337_010--Hb_018746_010 Hb_001691_130--Hb_002630_030 Hb_004968_090 Hb_004968_090 Hb_001691_130--Hb_004968_090 Hb_001691_130--Hb_005551_030 Hb_005666_030 Hb_005666_030 Hb_001691_130--Hb_005666_030 Hb_001691_130--Hb_001231_020 Hb_001691_130--Hb_106274_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.175849 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.055631 0.670183

CAGE analysis