Hb_002762_010

Information

Type -
Description -
Location Contig2762: 9762-10834
Sequence    

Annotation

kegg
ID pop:POPTR_0019s12360g
description POPTRDRAFT_574380; hypothetical protein
nr
ID XP_002326040.2
description hypothetical protein POPTR_0019s12360g [Populus trichocarpa]
swissprot
ID P27054
description Endochitinase PR4 OS=Phaseolus vulgaris GN=CHI4 PE=2 SV=1
trembl
ID B9IQS8
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0019s12360g PE=4 SV=2
Gene Ontology
ID GO:0004568
description endochitinase pr4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002762_010 0.0 - - hypothetical protein POPTR_0019s12360g [Populus trichocarpa]
2 Hb_043960_010 0.0414465009 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
3 Hb_018746_010 0.0488022047 - - PREDICTED: uncharacterized protein LOC105629982 [Jatropha curcas]
4 Hb_005337_010 0.0505093068 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Vitis vinifera]
5 Hb_001514_140 0.0539302581 - - -
6 Hb_007595_040 0.1050343523 - - ribosomal protein L2 (chloroplast) [Berberis bealei]
7 Hb_052469_020 0.1072193687 - - PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 2 [Vitis vinifera]
8 Hb_007456_030 0.1188670838 - - -
9 Hb_166210_010 0.1198068829 - - conserved hypothetical protein [Ricinus communis]
10 Hb_036731_010 0.1216728658 - - -
11 Hb_002121_070 0.1256493609 - - conserved hypothetical protein [Ricinus communis]
12 Hb_005714_120 0.1275711949 - - nucleic acid binding protein, putative [Ricinus communis]
13 Hb_000362_100 0.1279764381 - - -
14 Hb_010532_010 0.140550078 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 isoform X1 [Populus euphratica]
15 Hb_019135_010 0.1407375196 - - -
16 Hb_000367_150 0.1418798899 - - -
17 Hb_007632_140 0.1425333986 - - -
18 Hb_006449_060 0.142559384 - - PREDICTED: uncharacterized protein LOC104106381 [Nicotiana tomentosiformis]
19 Hb_105785_010 0.1489977862 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
20 Hb_000815_110 0.1632623854 - - RecName: Full=Casparian strip membrane protein 4; Short=RcCASP4 [Ricinus communis]

Gene co-expression network

sample Hb_002762_010 Hb_002762_010 Hb_043960_010 Hb_043960_010 Hb_002762_010--Hb_043960_010 Hb_018746_010 Hb_018746_010 Hb_002762_010--Hb_018746_010 Hb_005337_010 Hb_005337_010 Hb_002762_010--Hb_005337_010 Hb_001514_140 Hb_001514_140 Hb_002762_010--Hb_001514_140 Hb_007595_040 Hb_007595_040 Hb_002762_010--Hb_007595_040 Hb_052469_020 Hb_052469_020 Hb_002762_010--Hb_052469_020 Hb_043960_010--Hb_001514_140 Hb_043960_010--Hb_018746_010 Hb_043960_010--Hb_005337_010 Hb_000362_100 Hb_000362_100 Hb_043960_010--Hb_000362_100 Hb_002121_070 Hb_002121_070 Hb_043960_010--Hb_002121_070 Hb_018746_010--Hb_001514_140 Hb_166210_010 Hb_166210_010 Hb_018746_010--Hb_166210_010 Hb_036731_010 Hb_036731_010 Hb_018746_010--Hb_036731_010 Hb_005714_120 Hb_005714_120 Hb_018746_010--Hb_005714_120 Hb_005337_010--Hb_007595_040 Hb_005337_010--Hb_052469_020 Hb_007456_030 Hb_007456_030 Hb_005337_010--Hb_007456_030 Hb_005337_010--Hb_018746_010 Hb_001514_140--Hb_166210_010 Hb_001514_140--Hb_036731_010 Hb_001514_140--Hb_005714_120 Hb_007595_040--Hb_052469_020 Hb_105785_010 Hb_105785_010 Hb_007595_040--Hb_105785_010 Hb_007595_040--Hb_007456_030 Hb_000367_150 Hb_000367_150 Hb_007595_040--Hb_000367_150 Hb_052469_020--Hb_105785_010 Hb_052469_020--Hb_007456_030 Hb_052469_020--Hb_000367_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.281753 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0988554 0.603832

CAGE analysis