Hb_005337_010

Information

Type -
Description -
Location Contig5337: 4913-13160
Sequence    

Annotation

kegg
ID vvi:100265559
description probable leucine-rich repeat receptor-like protein kinase At1g35710
nr
ID XP_010656659.1
description PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Vitis vinifera]
swissprot
ID Q9LP24
description Probable leucine-rich repeat receptor-like protein kinase At1g35710 OS=Arabidopsis thaliana GN=At1g35710 PE=2 SV=1
trembl
ID F6HYL7
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_11s0037g00690 PE=4 SV=1
Gene Ontology
ID GO:0004672
description probable leucine-rich repeat receptor-like protein kinase at1g35710

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005337_010 0.0 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Vitis vinifera]
2 Hb_002762_010 0.0505093068 - - hypothetical protein POPTR_0019s12360g [Populus trichocarpa]
3 Hb_007595_040 0.0554086403 - - ribosomal protein L2 (chloroplast) [Berberis bealei]
4 Hb_052469_020 0.0574691974 - - PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 2 [Vitis vinifera]
5 Hb_043960_010 0.0637761768 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
6 Hb_007456_030 0.0751049701 - - -
7 Hb_018746_010 0.0974499778 - - PREDICTED: uncharacterized protein LOC105629982 [Jatropha curcas]
8 Hb_105785_010 0.099334625 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
9 Hb_001514_140 0.1001788544 - - -
10 Hb_000367_150 0.106490399 - - -
11 Hb_019135_010 0.1366030929 - - -
12 Hb_000815_110 0.1371468446 - - RecName: Full=Casparian strip membrane protein 4; Short=RcCASP4 [Ricinus communis]
13 Hb_000362_100 0.1384834834 - - -
14 Hb_007632_140 0.1438318353 - - -
15 Hb_002121_070 0.1461978126 - - conserved hypothetical protein [Ricinus communis]
16 Hb_005714_120 0.157858567 - - nucleic acid binding protein, putative [Ricinus communis]
17 Hb_036731_010 0.1588901731 - - -
18 Hb_007242_030 0.160546965 - - PREDICTED: methylesterase 3-like isoform X2 [Tarenaya hassleriana]
19 Hb_166210_010 0.1610703844 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001089_010 0.1717696988 - - PREDICTED: GDSL esterase/lipase 5-like [Jatropha curcas]

Gene co-expression network

sample Hb_005337_010 Hb_005337_010 Hb_002762_010 Hb_002762_010 Hb_005337_010--Hb_002762_010 Hb_007595_040 Hb_007595_040 Hb_005337_010--Hb_007595_040 Hb_052469_020 Hb_052469_020 Hb_005337_010--Hb_052469_020 Hb_043960_010 Hb_043960_010 Hb_005337_010--Hb_043960_010 Hb_007456_030 Hb_007456_030 Hb_005337_010--Hb_007456_030 Hb_018746_010 Hb_018746_010 Hb_005337_010--Hb_018746_010 Hb_002762_010--Hb_043960_010 Hb_002762_010--Hb_018746_010 Hb_001514_140 Hb_001514_140 Hb_002762_010--Hb_001514_140 Hb_002762_010--Hb_007595_040 Hb_002762_010--Hb_052469_020 Hb_007595_040--Hb_052469_020 Hb_105785_010 Hb_105785_010 Hb_007595_040--Hb_105785_010 Hb_007595_040--Hb_007456_030 Hb_000367_150 Hb_000367_150 Hb_007595_040--Hb_000367_150 Hb_052469_020--Hb_105785_010 Hb_052469_020--Hb_007456_030 Hb_052469_020--Hb_000367_150 Hb_043960_010--Hb_001514_140 Hb_043960_010--Hb_018746_010 Hb_000362_100 Hb_000362_100 Hb_043960_010--Hb_000362_100 Hb_002121_070 Hb_002121_070 Hb_043960_010--Hb_002121_070 Hb_007456_030--Hb_000367_150 Hb_007456_030--Hb_105785_010 Hb_001691_130 Hb_001691_130 Hb_007456_030--Hb_001691_130 Hb_018746_010--Hb_001514_140 Hb_166210_010 Hb_166210_010 Hb_018746_010--Hb_166210_010 Hb_036731_010 Hb_036731_010 Hb_018746_010--Hb_036731_010 Hb_005714_120 Hb_005714_120 Hb_018746_010--Hb_005714_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.041224 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.011575 0.104125

CAGE analysis