Hb_043960_010

Information

Type -
Description -
Location Contig43960: 7561-11878
Sequence    

Annotation

kegg
ID tcc:TCM_009549
description DNA/RNA polymerases superfamily protein
nr
ID XP_007044250.1
description DNA/RNA polymerases superfamily protein [Theobroma cacao]
swissprot
ID Q7LHG5
description Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY3B-I PE=3 SV=2
trembl
ID A0A061E6T4
description DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_009549 PE=4 SV=1
Gene Ontology
ID GO:0003676
description retrotransposon ty3-gypsy subclass

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_043960_010 0.0 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
2 Hb_002762_010 0.0414465009 - - hypothetical protein POPTR_0019s12360g [Populus trichocarpa]
3 Hb_001514_140 0.0495302886 - - -
4 Hb_018746_010 0.0532776043 - - PREDICTED: uncharacterized protein LOC105629982 [Jatropha curcas]
5 Hb_005337_010 0.0637761768 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Vitis vinifera]
6 Hb_000362_100 0.0869751452 - - -
7 Hb_002121_070 0.0872520449 - - conserved hypothetical protein [Ricinus communis]
8 Hb_005714_120 0.0954735655 - - nucleic acid binding protein, putative [Ricinus communis]
9 Hb_036731_010 0.0968441212 - - -
10 Hb_166210_010 0.1008914281 - - conserved hypothetical protein [Ricinus communis]
11 Hb_019135_010 0.1010023815 - - -
12 Hb_007632_140 0.1017577259 - - -
13 Hb_007456_030 0.1076095058 - - -
14 Hb_007595_040 0.1146006927 - - ribosomal protein L2 (chloroplast) [Berberis bealei]
15 Hb_052469_020 0.1160877876 - - PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 2 [Vitis vinifera]
16 Hb_000367_150 0.1196569987 - - -
17 Hb_105785_010 0.1502265275 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
18 Hb_010532_010 0.1546562638 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 isoform X1 [Populus euphratica]
19 Hb_006449_060 0.1560487535 - - PREDICTED: uncharacterized protein LOC104106381 [Nicotiana tomentosiformis]
20 Hb_002876_100 0.159645331 - - hypothetical protein POPTR_0019s11600g [Populus trichocarpa]

Gene co-expression network

sample Hb_043960_010 Hb_043960_010 Hb_002762_010 Hb_002762_010 Hb_043960_010--Hb_002762_010 Hb_001514_140 Hb_001514_140 Hb_043960_010--Hb_001514_140 Hb_018746_010 Hb_018746_010 Hb_043960_010--Hb_018746_010 Hb_005337_010 Hb_005337_010 Hb_043960_010--Hb_005337_010 Hb_000362_100 Hb_000362_100 Hb_043960_010--Hb_000362_100 Hb_002121_070 Hb_002121_070 Hb_043960_010--Hb_002121_070 Hb_002762_010--Hb_018746_010 Hb_002762_010--Hb_005337_010 Hb_002762_010--Hb_001514_140 Hb_007595_040 Hb_007595_040 Hb_002762_010--Hb_007595_040 Hb_052469_020 Hb_052469_020 Hb_002762_010--Hb_052469_020 Hb_001514_140--Hb_018746_010 Hb_166210_010 Hb_166210_010 Hb_001514_140--Hb_166210_010 Hb_036731_010 Hb_036731_010 Hb_001514_140--Hb_036731_010 Hb_005714_120 Hb_005714_120 Hb_001514_140--Hb_005714_120 Hb_018746_010--Hb_166210_010 Hb_018746_010--Hb_036731_010 Hb_018746_010--Hb_005714_120 Hb_005337_010--Hb_007595_040 Hb_005337_010--Hb_052469_020 Hb_007456_030 Hb_007456_030 Hb_005337_010--Hb_007456_030 Hb_005337_010--Hb_018746_010 Hb_007632_140 Hb_007632_140 Hb_000362_100--Hb_007632_140 Hb_000362_100--Hb_002121_070 Hb_019135_010 Hb_019135_010 Hb_000362_100--Hb_019135_010 Hb_000362_100--Hb_005714_120 Hb_000362_100--Hb_036731_010 Hb_002121_070--Hb_005714_120 Hb_002121_070--Hb_007632_140 Hb_002121_070--Hb_036731_010 Hb_002121_070--Hb_019135_010 Hb_002121_070--Hb_166210_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.00756383 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00361334 0.0195267

CAGE analysis