Hb_007632_140

Information

Type -
Description -
Location Contig7632: 152036-152706
Sequence    

Annotation

kegg
ID pop:POPTR_0001s37660g
description hypothetical protein
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007632_140 0.0 - - -
2 Hb_019135_010 0.016231346 - - -
3 Hb_000362_100 0.027966725 - - -
4 Hb_002121_070 0.0565932046 - - conserved hypothetical protein [Ricinus communis]
5 Hb_005714_120 0.0896330576 - - nucleic acid binding protein, putative [Ricinus communis]
6 Hb_106274_010 0.0897633515 - - hypothetical protein VITISV_008825 [Vitis vinifera]
7 Hb_005021_040 0.0975901758 - - PREDICTED: uncharacterized protein LOC103848240 [Brassica rapa]
8 Hb_043960_010 0.1017577259 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
9 Hb_000367_150 0.1061318096 - - -
10 Hb_001231_020 0.1078026208 - - -
11 Hb_011987_010 0.1082549441 - - PREDICTED: uncharacterized protein LOC105634770 [Jatropha curcas]
12 Hb_036731_010 0.1140072033 - - -
13 Hb_005551_030 0.122210096 - - PREDICTED: mediator of RNA polymerase II transcription subunit 27 [Jatropha curcas]
14 Hb_007456_030 0.1287552624 - - -
15 Hb_166210_010 0.1308554133 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001514_140 0.1309816223 - - -
17 Hb_002876_100 0.1325340584 - - hypothetical protein POPTR_0019s11600g [Populus trichocarpa]
18 Hb_001699_020 0.1355774686 - - hypothetical protein L484_026849 [Morus notabilis]
19 Hb_005666_030 0.136489622 - - PREDICTED: uncharacterized protein LOC103489421 [Cucumis melo]
20 Hb_002188_050 0.1386446771 - - PREDICTED: serine carboxypeptidase-like 2 [Jatropha curcas]

Gene co-expression network

sample Hb_007632_140 Hb_007632_140 Hb_019135_010 Hb_019135_010 Hb_007632_140--Hb_019135_010 Hb_000362_100 Hb_000362_100 Hb_007632_140--Hb_000362_100 Hb_002121_070 Hb_002121_070 Hb_007632_140--Hb_002121_070 Hb_005714_120 Hb_005714_120 Hb_007632_140--Hb_005714_120 Hb_106274_010 Hb_106274_010 Hb_007632_140--Hb_106274_010 Hb_005021_040 Hb_005021_040 Hb_007632_140--Hb_005021_040 Hb_019135_010--Hb_000362_100 Hb_019135_010--Hb_002121_070 Hb_019135_010--Hb_106274_010 Hb_000367_150 Hb_000367_150 Hb_019135_010--Hb_000367_150 Hb_001231_020 Hb_001231_020 Hb_019135_010--Hb_001231_020 Hb_000362_100--Hb_002121_070 Hb_000362_100--Hb_005714_120 Hb_036731_010 Hb_036731_010 Hb_000362_100--Hb_036731_010 Hb_043960_010 Hb_043960_010 Hb_000362_100--Hb_043960_010 Hb_002121_070--Hb_005714_120 Hb_002121_070--Hb_036731_010 Hb_166210_010 Hb_166210_010 Hb_002121_070--Hb_166210_010 Hb_005714_120--Hb_036731_010 Hb_005714_120--Hb_166210_010 Hb_001514_140 Hb_001514_140 Hb_005714_120--Hb_001514_140 Hb_005714_120--Hb_005021_040 Hb_106274_010--Hb_001231_020 Hb_005551_030 Hb_005551_030 Hb_106274_010--Hb_005551_030 Hb_005666_030 Hb_005666_030 Hb_106274_010--Hb_005666_030 Hb_004968_090 Hb_004968_090 Hb_106274_010--Hb_004968_090 Hb_001691_130 Hb_001691_130 Hb_106274_010--Hb_001691_130 Hb_011987_010 Hb_011987_010 Hb_106274_010--Hb_011987_010 Hb_002188_050 Hb_002188_050 Hb_005021_040--Hb_002188_050 Hb_006415_010 Hb_006415_010 Hb_005021_040--Hb_006415_010 Hb_000906_120 Hb_000906_120 Hb_005021_040--Hb_000906_120 Hb_005021_040--Hb_002121_070 Hb_005021_040--Hb_000362_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0403581 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0399531 0.182619

CAGE analysis