Hb_005021_040

Information

Type -
Description -
Location Contig5021: 85503-91742
Sequence    

Annotation

kegg
ID brp:103848240
description uncharacterized LOC103848240
nr
ID XP_009123442.1
description PREDICTED: uncharacterized protein LOC103848240 [Brassica rapa]
swissprot
ID -
description -
trembl
ID M4EW33
description Uncharacterized protein OS=Brassica rapa subsp. pekinensis GN=Bra033016 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005021_040 0.0 - - PREDICTED: uncharacterized protein LOC103848240 [Brassica rapa]
2 Hb_002188_050 0.0415203484 - - PREDICTED: serine carboxypeptidase-like 2 [Jatropha curcas]
3 Hb_006415_010 0.0671946305 - - -
4 Hb_000906_120 0.0820710582 - - hypothetical protein VITISV_006406 [Vitis vinifera]
5 Hb_002121_070 0.0824750719 - - conserved hypothetical protein [Ricinus communis]
6 Hb_005714_120 0.0892964334 - - nucleic acid binding protein, putative [Ricinus communis]
7 Hb_000362_100 0.0897589538 - - -
8 Hb_007632_140 0.0975901758 - - -
9 Hb_036731_010 0.1116468713 - - -
10 Hb_019135_010 0.1128896151 - - -
11 Hb_002876_100 0.1220328788 - - hypothetical protein POPTR_0019s11600g [Populus trichocarpa]
12 Hb_166210_010 0.1283918243 - - conserved hypothetical protein [Ricinus communis]
13 Hb_089299_010 0.1356226453 - - conserved hypothetical protein [Ricinus communis]
14 Hb_011987_010 0.1463055138 - - PREDICTED: uncharacterized protein LOC105634770 [Jatropha curcas]
15 Hb_001699_020 0.150987185 - - hypothetical protein L484_026849 [Morus notabilis]
16 Hb_188163_010 0.1565456917 - - hypothetical protein CISIN_1g048732mg [Citrus sinensis]
17 Hb_106274_010 0.1674265554 - - hypothetical protein VITISV_008825 [Vitis vinifera]
18 Hb_004129_180 0.1683252296 - - hypothetical protein JCGZ_11090 [Jatropha curcas]
19 Hb_043960_010 0.1687573936 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
20 Hb_001514_140 0.1714277654 - - -

Gene co-expression network

sample Hb_005021_040 Hb_005021_040 Hb_002188_050 Hb_002188_050 Hb_005021_040--Hb_002188_050 Hb_006415_010 Hb_006415_010 Hb_005021_040--Hb_006415_010 Hb_000906_120 Hb_000906_120 Hb_005021_040--Hb_000906_120 Hb_002121_070 Hb_002121_070 Hb_005021_040--Hb_002121_070 Hb_005714_120 Hb_005714_120 Hb_005021_040--Hb_005714_120 Hb_000362_100 Hb_000362_100 Hb_005021_040--Hb_000362_100 Hb_002188_050--Hb_006415_010 Hb_002188_050--Hb_000906_120 Hb_089299_010 Hb_089299_010 Hb_002188_050--Hb_089299_010 Hb_002188_050--Hb_005714_120 Hb_002188_050--Hb_002121_070 Hb_006415_010--Hb_000906_120 Hb_006415_010--Hb_089299_010 Hb_006415_010--Hb_005714_120 Hb_006415_010--Hb_002121_070 Hb_000906_120--Hb_089299_010 Hb_188163_010 Hb_188163_010 Hb_000906_120--Hb_188163_010 Hb_142051_010 Hb_142051_010 Hb_000906_120--Hb_142051_010 Hb_002121_070--Hb_000362_100 Hb_002121_070--Hb_005714_120 Hb_007632_140 Hb_007632_140 Hb_002121_070--Hb_007632_140 Hb_036731_010 Hb_036731_010 Hb_002121_070--Hb_036731_010 Hb_019135_010 Hb_019135_010 Hb_002121_070--Hb_019135_010 Hb_166210_010 Hb_166210_010 Hb_002121_070--Hb_166210_010 Hb_005714_120--Hb_036731_010 Hb_005714_120--Hb_166210_010 Hb_005714_120--Hb_000362_100 Hb_001514_140 Hb_001514_140 Hb_005714_120--Hb_001514_140 Hb_000362_100--Hb_007632_140 Hb_000362_100--Hb_019135_010 Hb_000362_100--Hb_036731_010 Hb_043960_010 Hb_043960_010 Hb_000362_100--Hb_043960_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0152938 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0279437 0.0717733

CAGE analysis