Hb_089299_010

Information

Type -
Description -
Location Contig89299: 6445-6792
Sequence    

Annotation

kegg
ID rcu:RCOM_0905050
description hypothetical protein
nr
ID XP_002518496.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RXM7
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0905050 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_089299_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000906_120 0.0643518041 - - hypothetical protein VITISV_006406 [Vitis vinifera]
3 Hb_006415_010 0.0691780386 - - -
4 Hb_142051_010 0.0743467545 - - -
5 Hb_002188_050 0.0991247053 - - PREDICTED: serine carboxypeptidase-like 2 [Jatropha curcas]
6 Hb_002809_090 0.1035415136 - - -
7 Hb_029510_080 0.1186927848 - - -
8 Hb_003057_030 0.1236333346 - - hypothetical protein JCGZ_06668 [Jatropha curcas]
9 Hb_005021_040 0.1356226453 - - PREDICTED: uncharacterized protein LOC103848240 [Brassica rapa]
10 Hb_161728_010 0.1477883952 - - hypothetical protein JCGZ_11176 [Jatropha curcas]
11 Hb_188163_010 0.1480198637 - - hypothetical protein CISIN_1g048732mg [Citrus sinensis]
12 Hb_002233_050 0.1714042082 - - PREDICTED: uncharacterized protein LOC104879391 [Vitis vinifera]
13 Hb_010129_020 0.1720741519 - - cytochrome P450, putative [Ricinus communis]
14 Hb_004487_060 0.1752034662 - - cytochrome P450, putative [Ricinus communis]
15 Hb_005207_010 0.1758721415 - - PREDICTED: zinc finger Ran-binding domain-containing protein 2-like [Jatropha curcas]
16 Hb_005714_120 0.1791750505 - - nucleic acid binding protein, putative [Ricinus communis]
17 Hb_036731_010 0.183340759 - - -
18 Hb_001534_040 0.1835229569 - - hypothetical protein JCGZ_08436 [Jatropha curcas]
19 Hb_097933_010 0.1881273111 - - PREDICTED: 2-alkenal reductase (NADP(+)-dependent)-like isoform X1 [Jatropha curcas]
20 Hb_166210_010 0.1893564509 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_089299_010 Hb_089299_010 Hb_000906_120 Hb_000906_120 Hb_089299_010--Hb_000906_120 Hb_006415_010 Hb_006415_010 Hb_089299_010--Hb_006415_010 Hb_142051_010 Hb_142051_010 Hb_089299_010--Hb_142051_010 Hb_002188_050 Hb_002188_050 Hb_089299_010--Hb_002188_050 Hb_002809_090 Hb_002809_090 Hb_089299_010--Hb_002809_090 Hb_029510_080 Hb_029510_080 Hb_089299_010--Hb_029510_080 Hb_000906_120--Hb_006415_010 Hb_000906_120--Hb_002188_050 Hb_005021_040 Hb_005021_040 Hb_000906_120--Hb_005021_040 Hb_188163_010 Hb_188163_010 Hb_000906_120--Hb_188163_010 Hb_000906_120--Hb_142051_010 Hb_006415_010--Hb_002188_050 Hb_006415_010--Hb_005021_040 Hb_005714_120 Hb_005714_120 Hb_006415_010--Hb_005714_120 Hb_002121_070 Hb_002121_070 Hb_006415_010--Hb_002121_070 Hb_142051_010--Hb_002809_090 Hb_142051_010--Hb_029510_080 Hb_003057_030 Hb_003057_030 Hb_142051_010--Hb_003057_030 Hb_161728_010 Hb_161728_010 Hb_142051_010--Hb_161728_010 Hb_002188_050--Hb_005021_040 Hb_002188_050--Hb_005714_120 Hb_002188_050--Hb_002121_070 Hb_002809_090--Hb_029510_080 Hb_002809_090--Hb_003057_030 Hb_002809_090--Hb_161728_010 Hb_177772_010 Hb_177772_010 Hb_002809_090--Hb_177772_010 Hb_029510_080--Hb_003057_030 Hb_029510_080--Hb_161728_010 Hb_029510_080--Hb_177772_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0968035 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.277289 0.346376

CAGE analysis