Hb_161728_010

Information

Type -
Description -
Location Contig161728: 1-432
Sequence    

Annotation

kegg
ID rcu:RCOM_0685770
description serine-threonine protein kinase, plant-type, putative (EC:2.7.11.23 1.3.1.74)
nr
ID KDP34814.1
description hypothetical protein JCGZ_11176 [Jatropha curcas]
swissprot
ID C0LGP4
description Probable LRR receptor-like serine/threonine-protein kinase At3g47570 OS=Arabidopsis thaliana GN=At3g47570 PE=2 SV=1
trembl
ID A0A067KSL1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11176 PE=3 SV=1
Gene Ontology
ID GO:0016021
description receptor-like protein kinase at3g47110

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_161728_010 0.0 - - hypothetical protein JCGZ_11176 [Jatropha curcas]
2 Hb_003057_030 0.0354499821 - - hypothetical protein JCGZ_06668 [Jatropha curcas]
3 Hb_029510_080 0.0403328397 - - -
4 Hb_002809_090 0.0457978908 - - -
5 Hb_142051_010 0.0936689966 - - -
6 Hb_177772_010 0.0945499382 - - PREDICTED: receptor-like protein 12 isoform X2 [Vitis vinifera]
7 Hb_089299_010 0.1477883952 - - conserved hypothetical protein [Ricinus communis]
8 Hb_003159_070 0.1527529258 - - Uncharacterized protein TCM_035723 [Theobroma cacao]
9 Hb_005207_010 0.1543384654 - - PREDICTED: zinc finger Ran-binding domain-containing protein 2-like [Jatropha curcas]
10 Hb_002233_050 0.1685635805 - - PREDICTED: uncharacterized protein LOC104879391 [Vitis vinifera]
11 Hb_000230_020 0.1890289174 - - cysteine synthase, putative [Ricinus communis]
12 Hb_006415_010 0.1985797211 - - -
13 Hb_000906_120 0.2084658106 - - hypothetical protein VITISV_006406 [Vitis vinifera]
14 Hb_000649_260 0.2116513805 - - uncharacterized LOC105634108 [Jatropha curcas]
15 Hb_011576_010 0.2123472002 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
16 Hb_060822_010 0.2131025132 - - -
17 Hb_001534_040 0.2138399736 - - hypothetical protein JCGZ_08436 [Jatropha curcas]
18 Hb_000832_340 0.2270907308 - - PREDICTED: psbP-like protein 2, chloroplastic isoform X3 [Nelumbo nucifera]
19 Hb_001019_210 0.2306445153 - - PREDICTED: protein kinase PINOID 2 [Gossypium raimondii]
20 Hb_004519_010 0.2332779731 - - PREDICTED: basic form of pathogenesis-related protein 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_161728_010 Hb_161728_010 Hb_003057_030 Hb_003057_030 Hb_161728_010--Hb_003057_030 Hb_029510_080 Hb_029510_080 Hb_161728_010--Hb_029510_080 Hb_002809_090 Hb_002809_090 Hb_161728_010--Hb_002809_090 Hb_142051_010 Hb_142051_010 Hb_161728_010--Hb_142051_010 Hb_177772_010 Hb_177772_010 Hb_161728_010--Hb_177772_010 Hb_089299_010 Hb_089299_010 Hb_161728_010--Hb_089299_010 Hb_003057_030--Hb_029510_080 Hb_003057_030--Hb_002809_090 Hb_003057_030--Hb_142051_010 Hb_003057_030--Hb_177772_010 Hb_003057_030--Hb_089299_010 Hb_029510_080--Hb_002809_090 Hb_029510_080--Hb_142051_010 Hb_029510_080--Hb_177772_010 Hb_029510_080--Hb_089299_010 Hb_002809_090--Hb_142051_010 Hb_002809_090--Hb_089299_010 Hb_002809_090--Hb_177772_010 Hb_142051_010--Hb_089299_010 Hb_000906_120 Hb_000906_120 Hb_142051_010--Hb_000906_120 Hb_003159_070 Hb_003159_070 Hb_177772_010--Hb_003159_070 Hb_005207_010 Hb_005207_010 Hb_177772_010--Hb_005207_010 Hb_089299_010--Hb_000906_120 Hb_006415_010 Hb_006415_010 Hb_089299_010--Hb_006415_010 Hb_002188_050 Hb_002188_050 Hb_089299_010--Hb_002188_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.170993 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.344102 0.244191

CAGE analysis