Hb_005207_010

Information

Type -
Description -
Location Contig5207: 9265-10935
Sequence    

Annotation

kegg
ID pop:POPTR_0006s15440g
description POPTRDRAFT_416655; hypothetical protein
nr
ID XP_012078741.1
description PREDICTED: zinc finger Ran-binding domain-containing protein 2-like [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9H8V8
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s15440g PE=4 SV=2
Gene Ontology
ID GO:0008270
description transcription initiation factor tfiid subunit 15-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005207_010 0.0 - - PREDICTED: zinc finger Ran-binding domain-containing protein 2-like [Jatropha curcas]
2 Hb_002233_050 0.0222076312 - - PREDICTED: uncharacterized protein LOC104879391 [Vitis vinifera]
3 Hb_000649_260 0.0956497671 - - uncharacterized LOC105634108 [Jatropha curcas]
4 Hb_006449_060 0.1049919469 - - PREDICTED: uncharacterized protein LOC104106381 [Nicotiana tomentosiformis]
5 Hb_010532_010 0.1078065463 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 isoform X1 [Populus euphratica]
6 Hb_166210_010 0.1109025261 - - conserved hypothetical protein [Ricinus communis]
7 Hb_029510_080 0.1231212782 - - -
8 Hb_003159_070 0.1231271866 - - Uncharacterized protein TCM_035723 [Theobroma cacao]
9 Hb_036731_010 0.1244741469 - - -
10 Hb_003057_030 0.1251661818 - - hypothetical protein JCGZ_06668 [Jatropha curcas]
11 Hb_002809_090 0.137694487 - - -
12 Hb_177772_010 0.145016406 - - PREDICTED: receptor-like protein 12 isoform X2 [Vitis vinifera]
13 Hb_005714_120 0.1469975213 - - nucleic acid binding protein, putative [Ricinus communis]
14 Hb_161728_010 0.1543384654 - - hypothetical protein JCGZ_11176 [Jatropha curcas]
15 Hb_001514_140 0.1607521709 - - -
16 Hb_018746_010 0.1636605012 - - PREDICTED: uncharacterized protein LOC105629982 [Jatropha curcas]
17 Hb_006415_010 0.1693065349 - - -
18 Hb_089299_010 0.1758721415 - - conserved hypothetical protein [Ricinus communis]
19 Hb_002121_070 0.1798051356 - - conserved hypothetical protein [Ricinus communis]
20 Hb_142051_010 0.1887556251 - - -

Gene co-expression network

sample Hb_005207_010 Hb_005207_010 Hb_002233_050 Hb_002233_050 Hb_005207_010--Hb_002233_050 Hb_000649_260 Hb_000649_260 Hb_005207_010--Hb_000649_260 Hb_006449_060 Hb_006449_060 Hb_005207_010--Hb_006449_060 Hb_010532_010 Hb_010532_010 Hb_005207_010--Hb_010532_010 Hb_166210_010 Hb_166210_010 Hb_005207_010--Hb_166210_010 Hb_029510_080 Hb_029510_080 Hb_005207_010--Hb_029510_080 Hb_002233_050--Hb_166210_010 Hb_002233_050--Hb_006449_060 Hb_002233_050--Hb_010532_010 Hb_036731_010 Hb_036731_010 Hb_002233_050--Hb_036731_010 Hb_002233_050--Hb_000649_260 Hb_000649_260--Hb_006449_060 Hb_000649_260--Hb_010532_010 Hb_003159_070 Hb_003159_070 Hb_000649_260--Hb_003159_070 Hb_177772_010 Hb_177772_010 Hb_000649_260--Hb_177772_010 Hb_006449_060--Hb_010532_010 Hb_018746_010 Hb_018746_010 Hb_006449_060--Hb_018746_010 Hb_001514_140 Hb_001514_140 Hb_006449_060--Hb_001514_140 Hb_010532_010--Hb_018746_010 Hb_010532_010--Hb_001514_140 Hb_166210_010--Hb_036731_010 Hb_005714_120 Hb_005714_120 Hb_166210_010--Hb_005714_120 Hb_166210_010--Hb_001514_140 Hb_166210_010--Hb_018746_010 Hb_002121_070 Hb_002121_070 Hb_166210_010--Hb_002121_070 Hb_003057_030 Hb_003057_030 Hb_029510_080--Hb_003057_030 Hb_002809_090 Hb_002809_090 Hb_029510_080--Hb_002809_090 Hb_161728_010 Hb_161728_010 Hb_029510_080--Hb_161728_010 Hb_142051_010 Hb_142051_010 Hb_029510_080--Hb_142051_010 Hb_029510_080--Hb_177772_010 Hb_089299_010 Hb_089299_010 Hb_029510_080--Hb_089299_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.135402 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.125826 0.190109

CAGE analysis