Hb_002233_050

Information

Type -
Description -
Location Contig2233: 47537-50689
Sequence    

Annotation

kegg
ID vvi:104879391
description uncharacterized LOC104879391
nr
ID XP_010650377.1
description PREDICTED: uncharacterized protein LOC104879391 [Vitis vinifera]
swissprot
ID -
description -
trembl
ID A0A0B2P658
description Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1 OS=Glycine soja GN=glysoja_037484 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002233_050 0.0 - - PREDICTED: uncharacterized protein LOC104879391 [Vitis vinifera]
2 Hb_005207_010 0.0222076312 - - PREDICTED: zinc finger Ran-binding domain-containing protein 2-like [Jatropha curcas]
3 Hb_166210_010 0.0888751294 - - conserved hypothetical protein [Ricinus communis]
4 Hb_006449_060 0.0979250343 - - PREDICTED: uncharacterized protein LOC104106381 [Nicotiana tomentosiformis]
5 Hb_010532_010 0.1005203663 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 isoform X1 [Populus euphratica]
6 Hb_036731_010 0.1023731523 - - -
7 Hb_000649_260 0.1078325845 - - uncharacterized LOC105634108 [Jatropha curcas]
8 Hb_005714_120 0.1251524435 - - nucleic acid binding protein, putative [Ricinus communis]
9 Hb_029510_080 0.1345125446 - - -
10 Hb_003057_030 0.1372582466 - - hypothetical protein JCGZ_06668 [Jatropha curcas]
11 Hb_001514_140 0.1409656521 - - -
12 Hb_018746_010 0.1446040677 - - PREDICTED: uncharacterized protein LOC105629982 [Jatropha curcas]
13 Hb_003159_070 0.1446758736 - - Uncharacterized protein TCM_035723 [Theobroma cacao]
14 Hb_002809_090 0.1468636332 - - -
15 Hb_006415_010 0.1566076067 - - -
16 Hb_002121_070 0.1580343455 - - conserved hypothetical protein [Ricinus communis]
17 Hb_177772_010 0.1662769032 - - PREDICTED: receptor-like protein 12 isoform X2 [Vitis vinifera]
18 Hb_161728_010 0.1685635805 - - hypothetical protein JCGZ_11176 [Jatropha curcas]
19 Hb_089299_010 0.1714042082 - - conserved hypothetical protein [Ricinus communis]
20 Hb_005021_040 0.1794191248 - - PREDICTED: uncharacterized protein LOC103848240 [Brassica rapa]

Gene co-expression network

sample Hb_002233_050 Hb_002233_050 Hb_005207_010 Hb_005207_010 Hb_002233_050--Hb_005207_010 Hb_166210_010 Hb_166210_010 Hb_002233_050--Hb_166210_010 Hb_006449_060 Hb_006449_060 Hb_002233_050--Hb_006449_060 Hb_010532_010 Hb_010532_010 Hb_002233_050--Hb_010532_010 Hb_036731_010 Hb_036731_010 Hb_002233_050--Hb_036731_010 Hb_000649_260 Hb_000649_260 Hb_002233_050--Hb_000649_260 Hb_005207_010--Hb_000649_260 Hb_005207_010--Hb_006449_060 Hb_005207_010--Hb_010532_010 Hb_005207_010--Hb_166210_010 Hb_029510_080 Hb_029510_080 Hb_005207_010--Hb_029510_080 Hb_166210_010--Hb_036731_010 Hb_005714_120 Hb_005714_120 Hb_166210_010--Hb_005714_120 Hb_001514_140 Hb_001514_140 Hb_166210_010--Hb_001514_140 Hb_018746_010 Hb_018746_010 Hb_166210_010--Hb_018746_010 Hb_002121_070 Hb_002121_070 Hb_166210_010--Hb_002121_070 Hb_006449_060--Hb_010532_010 Hb_006449_060--Hb_000649_260 Hb_006449_060--Hb_018746_010 Hb_006449_060--Hb_001514_140 Hb_010532_010--Hb_000649_260 Hb_010532_010--Hb_018746_010 Hb_010532_010--Hb_001514_140 Hb_036731_010--Hb_005714_120 Hb_036731_010--Hb_002121_070 Hb_036731_010--Hb_001514_140 Hb_036731_010--Hb_018746_010 Hb_000362_100 Hb_000362_100 Hb_036731_010--Hb_000362_100 Hb_003159_070 Hb_003159_070 Hb_000649_260--Hb_003159_070 Hb_177772_010 Hb_177772_010 Hb_000649_260--Hb_177772_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0542716 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0496597 0.0839995

CAGE analysis