Hb_010532_010

Information

Type -
Description -
Location Contig10532: 41-1569
Sequence    

Annotation

kegg
ID tcc:TCM_045025
description Leucine-rich repeat receptor-like protein kinase family protein, putative
nr
ID XP_010999654.1
description PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 isoform X1 [Populus euphratica]
swissprot
ID Q8VZG8
description Probable LRR receptor-like serine/threonine-protein kinase At4g08850 OS=Arabidopsis thaliana GN=At4g08850 PE=2 SV=3
trembl
ID A0A061FY57
description Leucine-rich repeat receptor-like protein kinase family protein, putative OS=Theobroma cacao GN=TCM_045025 PE=4 SV=1
Gene Ontology
ID GO:0016301
description leucine-rich repeat receptor-like protein kinase family

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010532_010 0.0 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 isoform X1 [Populus euphratica]
2 Hb_006449_060 0.0029506 - - PREDICTED: uncharacterized protein LOC104106381 [Nicotiana tomentosiformis]
3 Hb_000649_260 0.0914035841 - - uncharacterized LOC105634108 [Jatropha curcas]
4 Hb_002233_050 0.1005203663 - - PREDICTED: uncharacterized protein LOC104879391 [Vitis vinifera]
5 Hb_018746_010 0.1017344804 - - PREDICTED: uncharacterized protein LOC105629982 [Jatropha curcas]
6 Hb_001514_140 0.1063860738 - - -
7 Hb_005207_010 0.1078065463 - - PREDICTED: zinc finger Ran-binding domain-containing protein 2-like [Jatropha curcas]
8 Hb_166210_010 0.1094280332 - - conserved hypothetical protein [Ricinus communis]
9 Hb_036731_010 0.1274245931 - - -
10 Hb_002762_010 0.140550078 - - hypothetical protein POPTR_0019s12360g [Populus trichocarpa]
11 Hb_005714_120 0.1534268038 - - nucleic acid binding protein, putative [Ricinus communis]
12 Hb_043960_010 0.1546562638 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
13 Hb_010678_010 0.1736381896 - - PREDICTED: alpha-glucosidase-like [Jatropha curcas]
14 Hb_003159_070 0.1785206871 - - Uncharacterized protein TCM_035723 [Theobroma cacao]
15 Hb_002121_070 0.1791558095 - - conserved hypothetical protein [Ricinus communis]
16 Hb_005337_010 0.1897957759 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Vitis vinifera]
17 Hb_005622_030 0.1987201247 - - transferase, putative [Ricinus communis]
18 Hb_000362_100 0.2018002426 - - -
19 Hb_001089_010 0.2107053306 - - PREDICTED: GDSL esterase/lipase 5-like [Jatropha curcas]
20 Hb_000987_160 0.2137599957 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Jatropha curcas]

Gene co-expression network

sample Hb_010532_010 Hb_010532_010 Hb_006449_060 Hb_006449_060 Hb_010532_010--Hb_006449_060 Hb_000649_260 Hb_000649_260 Hb_010532_010--Hb_000649_260 Hb_002233_050 Hb_002233_050 Hb_010532_010--Hb_002233_050 Hb_018746_010 Hb_018746_010 Hb_010532_010--Hb_018746_010 Hb_001514_140 Hb_001514_140 Hb_010532_010--Hb_001514_140 Hb_005207_010 Hb_005207_010 Hb_010532_010--Hb_005207_010 Hb_006449_060--Hb_000649_260 Hb_006449_060--Hb_002233_050 Hb_006449_060--Hb_018746_010 Hb_006449_060--Hb_005207_010 Hb_006449_060--Hb_001514_140 Hb_003159_070 Hb_003159_070 Hb_000649_260--Hb_003159_070 Hb_000649_260--Hb_005207_010 Hb_000649_260--Hb_002233_050 Hb_177772_010 Hb_177772_010 Hb_000649_260--Hb_177772_010 Hb_002233_050--Hb_005207_010 Hb_166210_010 Hb_166210_010 Hb_002233_050--Hb_166210_010 Hb_036731_010 Hb_036731_010 Hb_002233_050--Hb_036731_010 Hb_018746_010--Hb_001514_140 Hb_002762_010 Hb_002762_010 Hb_018746_010--Hb_002762_010 Hb_043960_010 Hb_043960_010 Hb_018746_010--Hb_043960_010 Hb_018746_010--Hb_166210_010 Hb_018746_010--Hb_036731_010 Hb_005714_120 Hb_005714_120 Hb_018746_010--Hb_005714_120 Hb_001514_140--Hb_043960_010 Hb_001514_140--Hb_002762_010 Hb_001514_140--Hb_166210_010 Hb_001514_140--Hb_036731_010 Hb_001514_140--Hb_005714_120 Hb_005207_010--Hb_166210_010 Hb_029510_080 Hb_029510_080 Hb_005207_010--Hb_029510_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0501683 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0238318 0.0618184

CAGE analysis