Hb_005714_120

Information

Type -
Description -
Location Contig5714: 109687-111129
Sequence    

Annotation

kegg
ID rcu:RCOM_1375410
description nucleic acid binding protein, putative
nr
ID XP_002529014.1
description nucleic acid binding protein, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SSP5
description Nucleic acid binding protein, putative OS=Ricinus communis GN=RCOM_1375410 PE=4 SV=1
Gene Ontology
ID GO:0003676
description nucleic acid binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005714_120 0.0 - - nucleic acid binding protein, putative [Ricinus communis]
2 Hb_036731_010 0.0270027707 - - -
3 Hb_002121_070 0.0331188234 - - conserved hypothetical protein [Ricinus communis]
4 Hb_166210_010 0.0454986618 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000362_100 0.0621932833 - - -
6 Hb_001514_140 0.0845725089 - - -
7 Hb_005021_040 0.0892964334 - - PREDICTED: uncharacterized protein LOC103848240 [Brassica rapa]
8 Hb_007632_140 0.0896330576 - - -
9 Hb_018746_010 0.0954065645 - - PREDICTED: uncharacterized protein LOC105629982 [Jatropha curcas]
10 Hb_043960_010 0.0954735655 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
11 Hb_019135_010 0.1029182085 - - -
12 Hb_002876_100 0.1137937779 - - hypothetical protein POPTR_0019s11600g [Populus trichocarpa]
13 Hb_002188_050 0.1191091191 - - PREDICTED: serine carboxypeptidase-like 2 [Jatropha curcas]
14 Hb_006415_010 0.1200463654 - - -
15 Hb_002233_050 0.1251524435 - - PREDICTED: uncharacterized protein LOC104879391 [Vitis vinifera]
16 Hb_002762_010 0.1275711949 - - hypothetical protein POPTR_0019s12360g [Populus trichocarpa]
17 Hb_005207_010 0.1469975213 - - PREDICTED: zinc finger Ran-binding domain-containing protein 2-like [Jatropha curcas]
18 Hb_000906_120 0.1505833497 - - hypothetical protein VITISV_006406 [Vitis vinifera]
19 Hb_006449_060 0.1530336207 - - PREDICTED: uncharacterized protein LOC104106381 [Nicotiana tomentosiformis]
20 Hb_010532_010 0.1534268038 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 isoform X1 [Populus euphratica]

Gene co-expression network

sample Hb_005714_120 Hb_005714_120 Hb_036731_010 Hb_036731_010 Hb_005714_120--Hb_036731_010 Hb_002121_070 Hb_002121_070 Hb_005714_120--Hb_002121_070 Hb_166210_010 Hb_166210_010 Hb_005714_120--Hb_166210_010 Hb_000362_100 Hb_000362_100 Hb_005714_120--Hb_000362_100 Hb_001514_140 Hb_001514_140 Hb_005714_120--Hb_001514_140 Hb_005021_040 Hb_005021_040 Hb_005714_120--Hb_005021_040 Hb_036731_010--Hb_166210_010 Hb_036731_010--Hb_002121_070 Hb_036731_010--Hb_001514_140 Hb_018746_010 Hb_018746_010 Hb_036731_010--Hb_018746_010 Hb_036731_010--Hb_000362_100 Hb_002121_070--Hb_000362_100 Hb_007632_140 Hb_007632_140 Hb_002121_070--Hb_007632_140 Hb_019135_010 Hb_019135_010 Hb_002121_070--Hb_019135_010 Hb_002121_070--Hb_166210_010 Hb_166210_010--Hb_001514_140 Hb_166210_010--Hb_018746_010 Hb_002233_050 Hb_002233_050 Hb_166210_010--Hb_002233_050 Hb_000362_100--Hb_007632_140 Hb_000362_100--Hb_019135_010 Hb_043960_010 Hb_043960_010 Hb_000362_100--Hb_043960_010 Hb_001514_140--Hb_018746_010 Hb_001514_140--Hb_043960_010 Hb_002762_010 Hb_002762_010 Hb_001514_140--Hb_002762_010 Hb_002188_050 Hb_002188_050 Hb_005021_040--Hb_002188_050 Hb_006415_010 Hb_006415_010 Hb_005021_040--Hb_006415_010 Hb_000906_120 Hb_000906_120 Hb_005021_040--Hb_000906_120 Hb_005021_040--Hb_002121_070 Hb_005021_040--Hb_000362_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.137883 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.131044 0.393117

CAGE analysis